Variant report

Variant	rs194612
Chromosome Location	chr6:82494425-82494426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs191786	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];0.99[ASN][1000 genomes]
rs1931626	0.83[CEU][hapmap]
rs1931627	0.83[CEU][hapmap]
rs1931629	0.83[CEU][hapmap]
rs194609	0.94[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194616	0.92[EUR][1000 genomes]
rs194621	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194622	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6454238	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925561	0.83[CEU][hapmap]
rs9341901	0.83[CEU][hapmap]
rs9344224	0.83[CEU][hapmap]
rs9344225	0.83[CEU][hapmap]
rs9353030	0.83[CEU][hapmap]
rs9353031	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82483000-82497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82491800-82494800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:82492000-82498400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:82494000-82494600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:82494000-82496000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:82494400-82499000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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