Variant report

Variant	rs194621
Chromosome Location	chr6:82478870-82478871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82474728..82479449-chr6:82479643..82485217,7	MCF-7	breast:
2	chr6:82476333..82478960-chr6:82529549..82531643,2	MCF-7	breast:
3	chr6:82475840..82480204-chr6:82524356..82527900,4	MCF-7	breast:
4	chr6:82477711..82479254-chr6:82489074..82491112,2	MCF-7	breast:
5	chr6:82476634..82480378-chr6:82495260..82498447,4	MCF-7	breast:
6	chr6:82474515..82478968-chr6:82494879..82497853,4	MCF-7	breast:
7	chr6:82477019..82479590-chr6:82506679..82508505,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs191786	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1931626	0.83[CEU][hapmap]
rs1931627	0.83[CEU][hapmap]
rs1931629	0.83[CEU][hapmap]
rs194609	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194610	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194612	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194616	0.97[EUR][1000 genomes]
rs194619	0.84[YRI][hapmap]
rs194622	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454238	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925561	0.83[CEU][hapmap]
rs9341901	0.83[CEU][hapmap]
rs9344224	0.83[CEU][hapmap]
rs9344225	0.83[CEU][hapmap]
rs9353030	0.83[CEU][hapmap]
rs9353031	0.83[CEU][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82473800-82480600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:82474200-82485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:82475600-82481200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:82477000-82479000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:82477000-82480400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:82477200-82479000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:82477200-82479200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:82477200-82479600	Enhancers	HepG2	liver
9	chr6:82477200-82480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:82477200-82480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:82477400-82479200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:82477400-82483600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:82477600-82479200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:82477600-82479400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:82477600-82479400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:82477600-82479400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:82477600-82479400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:82477600-82479400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:82477600-82479400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:82477600-82479400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:82477600-82479400	Weak transcription	NHEK	skin
22	chr6:82477600-82479600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:82477600-82479600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:82477600-82479600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:82477600-82480400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:82477600-82480400	Enhancers	NHDF-Ad	bronchial
27	chr6:82477600-82480400	Enhancers	Osteobl	bone
28	chr6:82477600-82481600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:82477600-82482800	Weak transcription	Stomach Mucosa	stomach
30	chr6:82477600-82483200	Enhancers	Hela-S3	cervix
31	chr6:82477600-82485400	Weak transcription	Placenta	Placenta
32	chr6:82477800-82479200	Weak transcription	HMEC	breast
33	chr6:82477800-82479600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr6:82477800-82480200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:82478200-82482400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:82478400-82479400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:82478400-82481000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:82478600-82479000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:82478600-82482000	Weak transcription	Primary hematopoietic stem cells	blood

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