Variant report

Variant	rs194619
Chromosome Location	chr6:82475782-82475783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82457933..82460179-chr6:82475399..82477711,2	MCF-7	breast:
2	chr6:82474728..82479449-chr6:82479643..82485217,7	MCF-7	breast:
3	chr6:82474912..82477439-chr6:82515364..82517763,2	MCF-7	breast:
4	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:
5	chr6:82474515..82478968-chr6:82494879..82497853,4	MCF-7	breast:
6	chr6:82474057..82476070-chr6:82505674..82508498,2	MCF-7	breast:
7	chr6:82448675..82451514-chr6:82474859..82477314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

rs_ID	r²[population]
rs17729715	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1931624	0.88[CHB][hapmap]
rs194609	0.84[YRI][hapmap]
rs194631	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2323517	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9361862	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9443936	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs976069	1.00[CHB][hapmap];0.86[JPT][hapmap]

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82463800-82476000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82463800-82477000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82464000-82477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:82464400-82475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:82467400-82477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:82467800-82476200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:82468000-82476000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:82469800-82476200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:82470000-82476200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:82470800-82475800	Weak transcription	Fetal Intestine Large	intestine
11	chr6:82470800-82475800	Weak transcription	Small Intestine	intestine
12	chr6:82471000-82476000	Weak transcription	Stomach Mucosa	stomach
13	chr6:82471000-82476600	Weak transcription	Fetal Stomach	stomach
14	chr6:82471800-82476000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:82471800-82476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:82472000-82476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:82472000-82476200	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:82472200-82476000	Weak transcription	HSMM	muscle
19	chr6:82472200-82476200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:82472200-82476400	Weak transcription	NHEK	skin
21	chr6:82472400-82476400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:82472600-82475800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:82472600-82476000	Weak transcription	HMEC	breast
24	chr6:82472800-82475800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:82472800-82476000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:82472800-82476400	Enhancers	HepG2	liver
27	chr6:82473000-82476200	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:82473200-82476000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:82473200-82476000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:82473400-82475800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:82473400-82476000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:82473800-82480600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:82474000-82475800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:82474000-82475800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:82474000-82476200	Weak transcription	Placenta	Placenta
36	chr6:82474200-82485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:82474400-82476000	Enhancers	Hela-S3	cervix
38	chr6:82474600-82476600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr6:82475600-82475800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:82475600-82475800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:82475600-82475800	Enhancers	Dnd41	blood
42	chr6:82475600-82475800	Enhancers	NHLF	lung
43	chr6:82475600-82476000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:82475600-82476000	Enhancers	Osteobl	bone
45	chr6:82475600-82476200	Enhancers	A549	lung
46	chr6:82475600-82476200	Enhancers	NH-A	brain
47	chr6:82475600-82476200	Enhancers	NHDF-Ad	bronchial
48	chr6:82475600-82477400	Enhancers	Fetal Intestine Small	intestine
49	chr6:82475600-82477400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr6:82475600-82477600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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