Variant report

Variant	rs17729715
Chromosome Location	chr6:82521427-82521428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82462237..82465542-chr6:82518745..82522401,4	MCF-7	breast:
2	chr6:82519114..82521777-chr6:82521792..82524425,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction
ENSG00000224995	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1291464	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1291465	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs171836	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1931624	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs194605	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194606	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194619	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs194631	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2184349	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2323517	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4706147	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72968	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9353032	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9361862	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9443936	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs976069	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82517600-82522400	Weak transcription	HepG2	liver
3	chr6:82518800-82522400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:82518800-82524200	Weak transcription	NHLF	lung
5	chr6:82519200-82523000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:82519200-82524200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:82519200-82528800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:82519400-82522400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:82519400-82524200	Weak transcription	Osteobl	bone
12	chr6:82519600-82522000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:82519600-82522000	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:82519800-82521800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:82520000-82521600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:82520000-82522000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:82520000-82522000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:82520400-82521800	Weak transcription	Primary B cells from cord blood	blood
19	chr6:82520600-82521600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:82520600-82522000	Weak transcription	Primary B cells from peripheral blood	blood

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