Variant report

Variant	rs194631
Chromosome Location	chr6:82518264-82518265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82515412..82518371-chr6:82518489..82521368,3	MCF-7	breast:
2	chr6:82460838..82463430-chr6:82515325..82518530,3	MCF-7	breast:
3	chr6:82516650..82518366-chr6:82523336..82527029,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction
ENSG00000224995	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1034241	0.88[YRI][hapmap]
rs1291464	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1291465	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs171836	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17729715	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1931624	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs194605	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs194606	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs194613	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs194614	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs194619	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2184349	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2323517	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4142264	0.84[AMR][1000 genomes]
rs4706147	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72968	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9353032	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9361862	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9443936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs976069	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82516600-82518400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:82516600-82519200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:82517200-82518400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:82517400-82518400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:82517600-82518400	Enhancers	Primary B cells from cord blood	blood
7	chr6:82517600-82518600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:82517600-82522400	Weak transcription	HepG2	liver
9	chr6:82517800-82518400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:82517800-82518600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:82517800-82518600	Enhancers	Adipose Nuclei	Adipose
12	chr6:82517800-82519800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:82517800-82520600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:82518000-82519400	Enhancers	Fetal Heart	heart
15	chr6:82518000-82519600	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr6:82518200-82518400	Enhancers	Colon Smooth Muscle	Colon
17	chr6:82518200-82518400	Weak transcription	Ovary	ovary
18	chr6:82518200-82518600	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:82518200-82519400	Flanking Active TSS	HUVEC	blood vessel

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