Variant report

Variant	rs4142264
Chromosome Location	chr6:82543692-82543693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82535510..82539999-chr6:82542680..82545257,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12523876	0.85[ASN][1000 genomes]
rs17729715	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1931624	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs1931634	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1931637	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1931647	0.86[ASN][1000 genomes]
rs194605	0.86[AMR][1000 genomes]
rs194619	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs194631	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs2184349	0.86[AMR][1000 genomes]
rs2323516	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2323517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3812145	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72968	0.86[AMR][1000 genomes]
rs7771970	0.86[ASN][1000 genomes]
rs9344226	0.81[ASN][1000 genomes]
rs9350936	0.94[ASN][1000 genomes]
rs9353032	0.84[AMR][1000 genomes]
rs9361862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443936	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs976069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
2	chr6:82540200-82544400	Enhancers	HepG2	liver
3	chr6:82540600-82544600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:82541000-82544800	Enhancers	Fetal Intestine Large	intestine
5	chr6:82541200-82546000	Enhancers	Stomach Mucosa	stomach
6	chr6:82541400-82544600	Enhancers	Fetal Intestine Small	intestine
7	chr6:82541600-82543800	Weak transcription	Pancreas	Pancrea
8	chr6:82542400-82543800	Weak transcription	Left Ventricle	heart
9	chr6:82542400-82543800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:82542400-82544000	Weak transcription	Small Intestine	intestine
11	chr6:82542600-82544000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:82543200-82544600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:82543200-82544600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr6:82543200-82544600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:82543400-82544000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:82543400-82544000	Enhancers	NHDF-Ad	bronchial
17	chr6:82543400-82544600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:82543400-82544600	Enhancers	HSMM	muscle
19	chr6:82543400-82544600	Enhancers	HSMMtube	muscle
20	chr6:82543600-82544400	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:82543600-82544400	Enhancers	A549	lung
22	chr6:82543600-82544600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:82543600-82544600	Enhancers	Hela-S3	cervix
24	chr6:82543600-82544800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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