Variant report

Variant	rs9350936
Chromosome Location	chr6:82570490-82570491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12523876	0.91[ASN][1000 genomes]
rs17729715	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1931624	0.88[JPT][hapmap]
rs1931634	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931637	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931647	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194619	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs194631	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2323516	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2323517	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812145	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142264	0.94[ASN][1000 genomes]
rs7771970	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9344226	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9361862	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9443936	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs976069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82565600-82572200	Weak transcription	HepG2	liver
3	chr6:82568200-82573000	Weak transcription	Stomach Mucosa	stomach
4	chr6:82568800-82572200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82569200-82572600	Weak transcription	Fetal Heart	heart
6	chr6:82569200-82572800	Weak transcription	HSMMtube	muscle
7	chr6:82569400-82570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:82569400-82570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:82569400-82571200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:82569400-82572000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:82569600-82571600	Enhancers	Osteobl	bone
12	chr6:82570000-82571000	Weak transcription	Ovary	ovary
13	chr6:82570000-82571000	Weak transcription	NHDF-Ad	bronchial
14	chr6:82570000-82575400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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