Variant report

Variant	rs194609
Chromosome Location	chr6:82467107-82467108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:82466428-82467144	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr6:82466890-82467247	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82461266..82464097-chr6:82465186..82468701,3	K562	blood:
2	chr6:82457043..82462432-chr6:82464909..82471112,8	MCF-7	breast:

Variant related genes	Relation type
FAM46A	TF binding region
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs191786	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs194610	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194612	0.94[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194616	0.99[EUR][1000 genomes]
rs194619	0.84[YRI][hapmap]
rs194621	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194622	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6454238	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82463800-82476000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82463800-82477000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82464000-82467600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:82464000-82469200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:82464000-82469600	Weak transcription	A549	lung
6	chr6:82464000-82477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:82464200-82467600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:82464200-82469200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:82464200-82469200	Weak transcription	HMEC	breast
10	chr6:82464200-82469600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:82464200-82469600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:82464200-82469600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:82464200-82469600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:82464200-82469600	Weak transcription	Osteobl	bone
15	chr6:82464200-82469800	Weak transcription	NHLF	lung
16	chr6:82464200-82470600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:82464200-82472800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:82464400-82467400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:82464400-82468400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:82464400-82475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:82464600-82468800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:82464600-82469200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:82464600-82471800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:82464800-82469200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:82464800-82469400	Weak transcription	Fetal Intestine Large	intestine
26	chr6:82465200-82469200	Weak transcription	Stomach Mucosa	stomach
27	chr6:82465200-82472000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:82465600-82470600	Weak transcription	Fetal Stomach	stomach
29	chr6:82465600-82470600	Weak transcription	NHDF-Ad	bronchial
30	chr6:82466200-82468800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr6:82466400-82467200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:82466400-82467200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:82466400-82467200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:82466400-82467400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:82466400-82467600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:82466400-82467800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:82466400-82467800	Enhancers	HepG2	liver
38	chr6:82466600-82467200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:82466600-82467200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:82466600-82467800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:82466800-82467200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:82466800-82467400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:82467000-82467200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:82467000-82467200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:82467000-82468000	Enhancers	HUES64 Cell Line	embryonic stem cell

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