Variant report

Variant	rs194622
Chromosome Location	chr6:82481360-82481361
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82464889..82466747-chr6:82480958..82483364,2	K562	blood:
2	chr6:82481035..82483542-chr6:82485659..82488482,2	MCF-7	breast:
3	chr6:82474728..82479449-chr6:82479643..82485217,7	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs191786	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1931626	0.83[CEU][hapmap]
rs1931627	0.80[CEU][hapmap]
rs194609	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194610	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194612	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194616	0.97[EUR][1000 genomes]
rs194619	0.83[YRI][hapmap]
rs194621	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454238	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925561	0.80[CEU][hapmap]
rs9341901	0.80[CEU][hapmap]
rs9344224	0.80[CEU][hapmap]
rs9344225	0.83[CEU][hapmap]
rs9353030	0.83[CEU][hapmap]
rs9353031	0.80[CEU][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82474200-82485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:82477400-82483600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:82477600-82481600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:82477600-82482800	Weak transcription	Stomach Mucosa	stomach
5	chr6:82477600-82483200	Enhancers	Hela-S3	cervix
6	chr6:82477600-82485400	Weak transcription	Placenta	Placenta
7	chr6:82478200-82482400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:82478600-82482000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:82479000-82481600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:82479600-82483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:82480000-82482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:82480000-82482000	Weak transcription	NHEK	skin
13	chr6:82480400-82481600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:82480400-82481600	Weak transcription	HMEC	breast
15	chr6:82480400-82481800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:82480400-82481800	Weak transcription	NHDF-Ad	bronchial
17	chr6:82480400-82482000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:82480400-82482000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:82480400-82482000	Weak transcription	Osteobl	bone
20	chr6:82480400-82482200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:82480400-82482600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:82480400-82485800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:82480600-82481600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:82481000-82481600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:82481200-82481600	Weak transcription	HepG2	liver
26	chr6:82481200-82482000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:82481200-82482400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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