Variant report

Variant	rs191786
Chromosome Location	chr6:82497480-82497481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:82493385..82494894-chr6:82496657..82499467,2	MCF-7	breast:
2	chr6:82496401..82499366-chr6:82532324..82534807,2	MCF-7	breast:
3	chr6:82495383..82498182-chr6:82525424..82528036,2	MCF-7	breast:
4	chr6:82459273..82465478-chr6:82493760..82501805,11	MCF-7	breast:
5	chr6:82476634..82480378-chr6:82495260..82498447,4	MCF-7	breast:
6	chr6:82495087..82497496-chr6:83073389..83075037,2	MCF-7	breast:
7	chr6:82474515..82478968-chr6:82494879..82497853,4	MCF-7	breast:
8	chr6:82496725..82498629-chr6:82523239..82526588,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146242	Chromatin interaction
ENSG00000224995	Chromatin interaction
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs194609	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs194610	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs194612	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];0.99[ASN][1000 genomes]
rs194621	0.90[ASN][1000 genomes]
rs194622	0.91[ASN][1000 genomes]
rs194635	0.88[MKK][hapmap]
rs6454238	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82492000-82498400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82494400-82499000	Enhancers	Stomach Mucosa	stomach
3	chr6:82494600-82499000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:82494800-82498800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:82495200-82497600	Weak transcription	HMEC	breast
6	chr6:82495800-82497600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:82495800-82497800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:82496000-82497600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:82496000-82500600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:82496200-82497600	Enhancers	NHDF-Ad	bronchial
11	chr6:82496200-82498400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:82496200-82498400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:82496200-82500000	Enhancers	HepG2	liver
14	chr6:82496400-82498400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:82496400-82498600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:82496400-82498600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:82496400-82499000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:82496800-82497600	Flanking Active TSS	Osteobl	bone
19	chr6:82496800-82497800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:82496800-82497800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:82496800-82497800	Enhancers	NHLF	lung
22	chr6:82497000-82497600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:82497000-82498000	Flanking Active TSS	Liver	Liver
24	chr6:82497000-82498600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:82497000-82498600	Enhancers	HSMM	muscle
26	chr6:82497200-82498000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:82497200-82498400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:82497200-82499200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:82497400-82497600	Flanking Active TSS	Hela-S3	cervix
30	chr6:82497400-82497800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:82497400-82498000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:82497400-82498000	Flanking Active TSS	A549	lung
33	chr6:82497400-82498400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:82497400-82499000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:82497400-82500000	Enhancers	Fetal Intestine Large	intestine

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