Variant report

Variant	rs11961442
Chromosome Location	chr6:82507123-82507124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82474057..82476070-chr6:82505674..82508498,2	MCF-7	breast:
2	chr6:82477019..82479590-chr6:82506679..82508505,2	MCF-7	breast:
3	chr6:82497950..82501733-chr6:82505295..82508156,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1034241	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs11969940	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192697	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13197670	0.81[EUR][1000 genomes]
rs13212198	0.83[EUR][1000 genomes]
rs13214556	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893463	0.96[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893523	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893524	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893526	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs16893572	0.83[EUR][1000 genomes]
rs16893614	0.81[EUR][1000 genomes]
rs1931626	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs1931627	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs1931628	0.81[AFR][1000 genomes]
rs1931629	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs1931646	0.81[EUR][1000 genomes]
rs194618	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs194620	0.95[EUR][1000 genomes]
rs1999630	0.89[EUR][1000 genomes]
rs34411814	0.89[EUR][1000 genomes]
rs34663254	0.81[EUR][1000 genomes]
rs34696161	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34723068	0.89[EUR][1000 genomes]
rs35039823	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35392002	0.83[EUR][1000 genomes]
rs35419006	0.89[EUR][1000 genomes]
rs35538583	0.81[EUR][1000 genomes]
rs4476879	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs56021267	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66652550	0.81[EUR][1000 genomes]
rs6925561	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs72899496	0.93[EUR][1000 genomes]
rs9341901	0.82[YRI][hapmap]
rs9344224	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs9344225	0.80[YRI][hapmap]
rs9353030	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs9353031	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82500800-82507400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:82503200-82507200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:82506600-82508800	Enhancers	HUVEC	blood vessel
4	chr6:82506800-82507600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:82507000-82507400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:82507000-82508000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:82507000-82508600	Enhancers	Primary monocytes fromperipheralblood	blood

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