Variant report

Variant	rs35392002
Chromosome Location	chr6:82558665-82558666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1034241	0.81[EUR][1000 genomes]
rs11961442	0.83[EUR][1000 genomes]
rs11969940	0.83[EUR][1000 genomes]
rs13197670	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13212198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212500	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13214556	0.83[EUR][1000 genomes]
rs16893463	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16893491	0.83[EUR][1000 genomes]
rs16893518	0.83[EUR][1000 genomes]
rs16893524	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16893526	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16893572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16893614	0.98[EUR][1000 genomes]
rs1931644	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931646	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194618	0.81[EUR][1000 genomes]
rs194620	0.81[EUR][1000 genomes]
rs1999630	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34411814	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34663254	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34723068	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35419006	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35538583	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4476879	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56021267	0.84[EUR][1000 genomes]
rs6454240	0.81[EUR][1000 genomes]
rs66652550	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67263687	0.93[EUR][1000 genomes]
rs72899496	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82553400-82559000	Weak transcription	Left Ventricle	heart
2	chr6:82555600-82567400	Weak transcription	Aorta	Aorta
3	chr6:82556200-82565200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:82556800-82559200	Enhancers	HepG2	liver
5	chr6:82558200-82558800	Weak transcription	Right Atrium	heart
6	chr6:82558200-82563600	Weak transcription	Stomach Mucosa	stomach
7	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:82558400-82559000	Weak transcription	Gastric	stomach

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