Variant report

Variant	rs56021267
Chromosome Location	chr6:82501780-82501781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82498347..82500679-chr6:82501135..82504040,2	K562	blood:
2	chr6:82459273..82465478-chr6:82493760..82501805,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1034241	0.96[EUR][1000 genomes]
rs11961442	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11969940	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13192697	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13197670	0.83[EUR][1000 genomes]
rs13212198	0.84[EUR][1000 genomes]
rs13214556	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893463	0.98[EUR][1000 genomes]
rs16893491	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893518	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893523	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893524	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893526	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16893572	0.84[EUR][1000 genomes]
rs16893614	0.83[EUR][1000 genomes]
rs1931646	0.83[EUR][1000 genomes]
rs194618	0.96[EUR][1000 genomes]
rs194620	0.96[EUR][1000 genomes]
rs1999630	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34411814	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34663254	0.83[EUR][1000 genomes]
rs34696161	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34723068	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35039823	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35392002	0.84[EUR][1000 genomes]
rs35419006	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35538583	0.83[EUR][1000 genomes]
rs4476879	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454240	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66652550	0.83[EUR][1000 genomes]
rs72899496	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82497800-82503200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:82499000-82502400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:82499000-82503200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82499800-82503000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:82500800-82507400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:82501400-82502200	Enhancers	HUVEC	blood vessel
7	chr6:82501600-82501800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:82501600-82501800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:82501600-82501800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:82501600-82502600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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