Variant report

Variant	rs2185587
Chromosome Location	chr6:82266262-82266263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1321763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341221	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1341223	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879669	1.00[EUR][1000 genomes]
rs16893157	1.00[EUR][1000 genomes]
rs16893196	1.00[EUR][1000 genomes]
rs16893200	1.00[EUR][1000 genomes]
rs16893204	1.00[EUR][1000 genomes]
rs16893220	1.00[EUR][1000 genomes]
rs1857302	1.00[EUR][1000 genomes]
rs1923151	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1923152	1.00[EUR][1000 genomes]
rs1923153	1.00[EUR][1000 genomes]
rs1923154	1.00[EUR][1000 genomes]
rs2153644	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2180771	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56139622	1.00[EUR][1000 genomes]
rs56347700	1.00[EUR][1000 genomes]
rs56354221	1.00[EUR][1000 genomes]
rs57540087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58348892	1.00[EUR][1000 genomes]
rs59561150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59828216	1.00[EUR][1000 genomes]
rs61279115	1.00[EUR][1000 genomes]
rs6900056	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6903301	1.00[EUR][1000 genomes]
rs6903470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905459	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6907542	1.00[EUR][1000 genomes]
rs6909563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915424	1.00[EUR][1000 genomes]
rs6923049	1.00[EUR][1000 genomes]
rs6923636	1.00[EUR][1000 genomes]
rs6926893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932354	1.00[EUR][1000 genomes]
rs6935793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749103	1.00[EUR][1000 genomes]
rs73749105	1.00[EUR][1000 genomes]
rs73749107	1.00[EUR][1000 genomes]
rs73749108	1.00[EUR][1000 genomes]
rs73749122	1.00[EUR][1000 genomes]
rs73749125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749183	1.00[EUR][1000 genomes]
rs73751432	1.00[EUR][1000 genomes]
rs73751433	1.00[EUR][1000 genomes]
rs73751439	1.00[EUR][1000 genomes]
rs73751440	1.00[EUR][1000 genomes]
rs73751441	1.00[EUR][1000 genomes]
rs73751443	1.00[EUR][1000 genomes]
rs73751445	1.00[EUR][1000 genomes]
rs7739429	1.00[EUR][1000 genomes]
rs9294236	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9688608	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9688618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82261000-82271000	Weak transcription	Aorta	Aorta
2	chr6:82263000-82266400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:82263400-82267600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:82263400-82270800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:82264600-82270800	Weak transcription	Fetal Lung	lung
6	chr6:82265200-82267400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:82265600-82266400	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:82265800-82266600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:82266000-82266400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:82266000-82266400	Enhancers	Brain Substantia Nigra	brain
11	chr6:82266000-82266400	Enhancers	Osteobl	bone
12	chr6:82266000-82266600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:82266200-82266600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:82266200-82267000	Enhancers	Colon Smooth Muscle	Colon
15	chr6:82266200-82267200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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