Variant report

Variant	rs56139622
Chromosome Location	chr6:82162274-82162275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1321763	1.00[EUR][1000 genomes]
rs1321764	1.00[EUR][1000 genomes]
rs1341221	1.00[EUR][1000 genomes]
rs16879669	1.00[EUR][1000 genomes]
rs16893157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16893196	1.00[EUR][1000 genomes]
rs16893200	1.00[EUR][1000 genomes]
rs16893204	1.00[EUR][1000 genomes]
rs16893220	1.00[EUR][1000 genomes]
rs1857302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1923151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1923152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1923153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1923154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153644	1.00[EUR][1000 genomes]
rs2180771	1.00[EUR][1000 genomes]
rs2185587	1.00[EUR][1000 genomes]
rs56166038	1.00[EUR][1000 genomes]
rs56347700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56354221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57049010	1.00[EUR][1000 genomes]
rs57540087	1.00[EUR][1000 genomes]
rs58348892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59561150	1.00[EUR][1000 genomes]
rs59828216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61279115	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900056	1.00[EUR][1000 genomes]
rs6903301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903470	1.00[EUR][1000 genomes]
rs6903966	1.00[EUR][1000 genomes]
rs6904093	1.00[EUR][1000 genomes]
rs6904760	1.00[EUR][1000 genomes]
rs6905459	1.00[EUR][1000 genomes]
rs6907542	1.00[EUR][1000 genomes]
rs6909563	1.00[EUR][1000 genomes]
rs6915424	1.00[EUR][1000 genomes]
rs6923049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926893	1.00[EUR][1000 genomes]
rs6931780	1.00[EUR][1000 genomes]
rs6932354	1.00[EUR][1000 genomes]
rs6935793	1.00[EUR][1000 genomes]
rs6936762	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748903	1.00[EUR][1000 genomes]
rs73748980	1.00[EUR][1000 genomes]
rs73749103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749108	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73749122	1.00[EUR][1000 genomes]
rs73749125	1.00[EUR][1000 genomes]
rs73749126	1.00[EUR][1000 genomes]
rs73749127	1.00[EUR][1000 genomes]
rs73749128	1.00[EUR][1000 genomes]
rs73749130	1.00[EUR][1000 genomes]
rs73749131	1.00[EUR][1000 genomes]
rs73749132	1.00[EUR][1000 genomes]
rs73749134	1.00[EUR][1000 genomes]
rs73749135	1.00[EUR][1000 genomes]
rs73749136	1.00[EUR][1000 genomes]
rs73749137	1.00[EUR][1000 genomes]
rs73749138	1.00[EUR][1000 genomes]
rs73749139	1.00[EUR][1000 genomes]
rs73749140	1.00[EUR][1000 genomes]
rs73749141	1.00[EUR][1000 genomes]
rs73749142	1.00[EUR][1000 genomes]
rs73749183	1.00[EUR][1000 genomes]
rs73750390	1.00[EUR][1000 genomes]
rs73750394	1.00[EUR][1000 genomes]
rs73750395	1.00[EUR][1000 genomes]
rs73750396	1.00[EUR][1000 genomes]
rs73751152	1.00[EUR][1000 genomes]
rs73751432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751433	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751439	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739429	1.00[EUR][1000 genomes]
rs9688608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9688618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv7935	chr6:82136511-82174968	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3475143	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3475144	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv442004	chr6:82147124-82171606	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv823765	chr6:82152910-82174129	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82159200-82162400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:82159800-82162400	Enhancers	Hela-S3	cervix
3	chr6:82160800-82163000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:82161400-82162400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:82161400-82162400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:82161600-82162600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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