Variant report

Variant	rs56166038
Chromosome Location	chr6:82009477-82009478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs16893157	1.00[EUR][1000 genomes]
rs1857302	1.00[EUR][1000 genomes]
rs56139622	1.00[EUR][1000 genomes]
rs56347700	1.00[EUR][1000 genomes]
rs56354221	1.00[EUR][1000 genomes]
rs57049010	1.00[EUR][1000 genomes]
rs58091605	0.90[AFR][1000 genomes]
rs58348892	1.00[EUR][1000 genomes]
rs59665108	0.90[AFR][1000 genomes]
rs59828216	1.00[EUR][1000 genomes]
rs61279115	1.00[EUR][1000 genomes]
rs6903301	1.00[EUR][1000 genomes]
rs6923049	1.00[EUR][1000 genomes]
rs6923636	1.00[EUR][1000 genomes]
rs73748903	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73748980	1.00[EUR][1000 genomes]
rs73748984	0.90[AFR][1000 genomes]
rs73749100	0.90[AFR][1000 genomes]
rs73749101	0.90[AFR][1000 genomes]
rs73749102	0.90[AFR][1000 genomes]
rs73749103	1.00[EUR][1000 genomes]
rs73749105	1.00[EUR][1000 genomes]
rs73749107	1.00[EUR][1000 genomes]
rs73749108	1.00[EUR][1000 genomes]
rs73750390	1.00[EUR][1000 genomes]
rs73750394	1.00[EUR][1000 genomes]
rs73750395	1.00[EUR][1000 genomes]
rs73750396	1.00[EUR][1000 genomes]
rs73751119	0.90[AFR][1000 genomes]
rs73751128	1.00[AFR][1000 genomes]
rs73751146	1.00[AFR][1000 genomes]
rs73751148	1.00[AFR][1000 genomes]
rs73751152	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73751432	1.00[EUR][1000 genomes]
rs73751433	1.00[EUR][1000 genomes]
rs73751439	1.00[EUR][1000 genomes]
rs73751440	1.00[EUR][1000 genomes]
rs73751441	1.00[EUR][1000 genomes]
rs73751443	1.00[EUR][1000 genomes]
rs73751445	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034440	chr6:82002417-82044834	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82008800-82010600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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