Variant report

Variant	rs58091605
Chromosome Location	chr6:81973493-81973494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56166038	0.90[AFR][1000 genomes]
rs59665108	1.00[AFR][1000 genomes]
rs73748903	0.90[AFR][1000 genomes]
rs73749100	1.00[AFR][1000 genomes]
rs73749101	1.00[AFR][1000 genomes]
rs73749102	1.00[AFR][1000 genomes]
rs73751119	1.00[AFR][1000 genomes]
rs73751128	0.90[AFR][1000 genomes]
rs73751146	0.90[AFR][1000 genomes]
rs73751148	0.90[AFR][1000 genomes]
rs73751152	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3383823	chr6:81973428-81973591	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81972800-81973600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:81973000-81973800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:81973400-81973600	Enhancers	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links