Variant report

Variant	rs6936762
Chromosome Location	chr6:82154385-82154386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16893157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1857302	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923151	1.00[AMR][1000 genomes]
rs1923152	1.00[AMR][1000 genomes]
rs1923153	1.00[AMR][1000 genomes]
rs1923154	1.00[AMR][1000 genomes]
rs56139622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56347700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56354221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58348892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59828216	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751432	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751433	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751445	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688608	1.00[AMR][1000 genomes]
rs9688618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv34899	chr6:82090758-82161121	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv2757183	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759450	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv7935	chr6:82136511-82174968	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3475143	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3475144	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv442004	chr6:82147124-82171606	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv823765	chr6:82152910-82174129	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82153200-82154800	Weak transcription	Stomach Mucosa	stomach

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