Variant report

Variant	rs6915396
Chromosome Location	chr6:35010490-35010491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:
2	chr6:35010474..35014059-chr6:35017313..35020799,3	K562	blood:
3	chr6:35008594..35011463-chr6:35016010..35018720,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3734267	1.00[EUR][1000 genomes]
rs57473655	1.00[EUR][1000 genomes]
rs59966688	1.00[EUR][1000 genomes]
rs61732794	1.00[EUR][1000 genomes]
rs6915884	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6927424	1.00[EUR][1000 genomes]
rs6935423	1.00[EUR][1000 genomes]
rs7741204	1.00[EUR][1000 genomes]
rs7758202	1.00[EUR][1000 genomes]
rs7763026	1.00[EUR][1000 genomes]
rs7768926	1.00[EUR][1000 genomes]
rs9462041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:34986400-35011800	Weak transcription	Dnd41	blood
4	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
9	chr6:34994200-35014400	Weak transcription	NHLF	lung
10	chr6:34994600-35036000	Weak transcription	K562	blood
11	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
12	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:35003200-35012000	Weak transcription	Thymus	Thymus
15	chr6:35003800-35012000	Strong transcription	Fetal Intestine Small	intestine
16	chr6:35003800-35014600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:35004000-35012200	Weak transcription	Fetal Thymus	thymus
18	chr6:35004200-35011800	Weak transcription	Fetal Kidney	kidney
19	chr6:35004200-35011800	Weak transcription	HMEC	breast
20	chr6:35004200-35012800	Weak transcription	Small Intestine	intestine
21	chr6:35004400-35010600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:35004400-35011000	Weak transcription	Stomach Mucosa	stomach
23	chr6:35004800-35012200	Weak transcription	Fetal Lung	lung
24	chr6:35005400-35012000	Strong transcription	Fetal Intestine Large	intestine
25	chr6:35005600-35010800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:35005800-35011000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:35006000-35012000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:35006000-35014200	Genic enhancers	HSMMtube	muscle
29	chr6:35006200-35010600	Weak transcription	Fetal Heart	heart
30	chr6:35006200-35010800	Weak transcription	NHEK	skin
31	chr6:35006200-35011000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:35006200-35011800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:35006200-35012000	Weak transcription	NHDF-Ad	bronchial
34	chr6:35006200-35012200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:35006200-35014200	Weak transcription	Osteobl	bone
36	chr6:35006400-35011800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:35006400-35012000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:35006600-35011800	Weak transcription	HSMM	muscle
39	chr6:35007200-35012000	Enhancers	Rectal Smooth Muscle	rectum
40	chr6:35007400-35010600	Genic enhancers	Fetal Muscle Trunk	muscle
41	chr6:35007400-35011000	Genic enhancers	Fetal Muscle Leg	muscle
42	chr6:35007400-35014200	Enhancers	Right Atrium	heart
43	chr6:35007600-35011200	Strong transcription	Primary T cells from cord blood	blood
44	chr6:35007800-35011000	Genic enhancers	Adipose Nuclei	Adipose
45	chr6:35007800-35011200	Genic enhancers	Lung	lung
46	chr6:35008000-35011000	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr6:35008600-35011000	Strong transcription	Primary B cells from cord blood	blood
48	chr6:35008600-35012000	Enhancers	Left Ventricle	heart
49	chr6:35008600-35014200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:35008800-35011800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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