Variant report

Variant	rs6935423
Chromosome Location	chr6:34996414-34996415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34994556..34998578-chr6:34998827..35004744,6	K562	blood:
2	chr6:34984374..34990603-chr6:34991816..34996687,6	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3734267	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57473655	1.00[EUR][1000 genomes]
rs59966688	1.00[EUR][1000 genomes]
rs61732794	1.00[EUR][1000 genomes]
rs6915396	1.00[EUR][1000 genomes]
rs6915884	1.00[EUR][1000 genomes]
rs6927424	1.00[EUR][1000 genomes]
rs7741204	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7758202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768926	1.00[EUR][1000 genomes]
rs9462041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34979800-35002000	Weak transcription	GM12878-XiMat	blood
4	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:34986400-35011800	Weak transcription	Dnd41	blood
6	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:34987400-34998600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:34987400-34999200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:34987400-34999600	Weak transcription	Fetal Kidney	kidney
12	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:34988600-34999200	Enhancers	Brain Anterior Caudate	brain
14	chr6:34989000-35002800	Weak transcription	Fetal Thymus	thymus
15	chr6:34989400-34996800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:34989400-35002200	Weak transcription	Thymus	Thymus
17	chr6:34990000-34998400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:34990800-34996800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:34990800-34997600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:34990800-35002800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
22	chr6:34993000-34996800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:34993400-34996800	Enhancers	Rectal Smooth Muscle	rectum
24	chr6:34993400-35002600	Weak transcription	Small Intestine	intestine
25	chr6:34993800-34998400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:34993800-34999200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:34993800-35000800	Weak transcription	Fetal Brain Female	brain
28	chr6:34993800-35006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
30	chr6:34994000-34997800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:34994000-34998600	Weak transcription	Fetal Lung	lung
32	chr6:34994000-35002400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:34994200-34997800	Weak transcription	HSMM	muscle
34	chr6:34994200-35004000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:34994200-35014400	Weak transcription	NHLF	lung
36	chr6:34994400-34996800	Strong transcription	Fetal Intestine Large	intestine
37	chr6:34994400-34997800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:34994400-34999200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:34994400-35001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:34994400-35003200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:34994400-35005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:34994600-35036000	Weak transcription	K562	blood
43	chr6:34994800-34996800	Enhancers	Liver	Liver
44	chr6:34994800-34996800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr6:34994800-34998800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:34995000-34996600	Strong transcription	HepG2	liver
47	chr6:34995000-34996800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:34995000-34996800	Enhancers	Brain Angular Gyrus	brain
49	chr6:34995000-34996800	Enhancers	Brain Cingulate Gyrus	brain
50	chr6:34995000-34998000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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