Variant report

Variant	rs6915800
Chromosome Location	chr6:31833660-31833661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr6:31832901-31833804	HepG2	liver:	n/a	n/a
2	TEAD4	chr6:31832802-31833978	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:31832294-31833670	HepG2	liver:	n/a	n/a
4	HNF4G	chr6:31832923-31833774	HepG2	liver:	n/a	chr6:31833173-31833186 chr6:31833173-31833187 chr6:31833228-31833242 chr6:31833226-31833244 chr6:31833169-31833191 chr6:31833229-31833241 chr6:31833172-31833187 chr6:31833229-31833242 chr6:31833229-31833241
5	MYBL2	chr6:31832778-31833746	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:31832664-31833961	HepG2	liver:	n/a	n/a
7	CHD2	chr6:31832931-31833686	HepG2	liver:	n/a	chr6:31833075-31833085
8	RCOR1	chr6:31832549-31834019	HepG2	liver:	n/a	n/a
9	HDAC2	chr6:31832680-31834128	HepG2	liver:	n/a	n/a
10	POLR2A	chr6:31832263-31834177	HepG2	liver:	n/a	n/a
11	RAD21	chr6:31832922-31833676	HepG2	liver:	n/a	n/a
12	HNF4A	chr6:31832926-31833660	HepG2	liver:	n/a	chr6:31833173-31833186 chr6:31833173-31833187 chr6:31833228-31833242 chr6:31833226-31833244 chr6:31833227-31833242 chr6:31833169-31833191 chr6:31833229-31833241 chr6:31833172-31833187 chr6:31833229-31833242 chr6:31833229-31833241
13	HNF4A	chr6:31832957-31833698	HepG2	liver:	n/a	chr6:31833173-31833186 chr6:31833173-31833187 chr6:31833228-31833242 chr6:31833226-31833244 chr6:31833227-31833242 chr6:31833169-31833191 chr6:31833229-31833241 chr6:31833172-31833187 chr6:31833229-31833242 chr6:31833229-31833241
14	ZBTB7A	chr6:31833414-31833728	HepG2	liver:	n/a	chr6:31833605-31833613
15	NR2F2	chr6:31832744-31833720	HepG2	liver:	n/a	n/a
16	EP300	chr6:31832740-31833821	HepG2	liver:	n/a	n/a
17	EP300	chr6:31832981-31833735	HepG2	liver:	n/a	n/a
18	HEY1	chr6:31832079-31834004	HepG2	liver:	n/a	n/a
19	POLR2A	chr6:31832338-31833713	K562	blood:	n/a	n/a
20	RXRA	chr6:31832951-31833739	HepG2	liver:	n/a	chr6:31833227-31833241 chr6:31833173-31833186 chr6:31833173-31833186 chr6:31833173-31833186
21	MYBL2	chr6:31830178-31834219	HepG2	liver:	n/a	n/a
22	MAZ	chr6:31832965-31833661	HepG2	liver:	n/a	n/a
23	HDAC2	chr6:31832905-31833835	HepG2	liver:	n/a	n/a
24	RXRA	chr6:31832711-31833793	HepG2	liver:	n/a	chr6:31833227-31833241 chr6:31833173-31833186 chr6:31833173-31833186 chr6:31833173-31833186
25	ZBTB7A	chr6:31832927-31833958	HepG2	liver:	n/a	chr6:31833605-31833613
26	HNF4G	chr6:31832913-31833702	HepG2	liver:	n/a	chr6:31833173-31833186 chr6:31833173-31833187 chr6:31833228-31833242 chr6:31833226-31833244 chr6:31833169-31833191 chr6:31833229-31833241 chr6:31833172-31833187 chr6:31833229-31833242 chr6:31833229-31833241
27	NFIC	chr6:31832648-31834156	HepG2	liver:	n/a	n/a
28	MXI1	chr6:31832910-31833944	HepG2	liver:	n/a	n/a
29	FOXA2	chr6:31832864-31833664	HepG2	liver:	n/a	n/a
30	MBD4	chr6:31832675-31833773	HepG2	liver:	n/a	n/a
31	CEBPB	chr6:31832935-31833712	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31788795..31791461-chr6:31833499..31835770,2	K562	blood:
2	chr6:31830912..31833686-chr6:32013315..32015593,2	K562	blood:
3	chr6:31829055..31832274-chr6:31832876..31835978,7	MCF-7	breast:
4	chr6:31670174..31672313-chr6:31830988..31833810,3	K562	blood:
5	chr6:31774180..31776496-chr6:31832190..31834757,3	K562	blood:
6	chr6:31772422..31776496-chr6:31829254..31834757,6	K562	blood:
7	chr6:31832130..31834569-chr6:31860075..31862005,2	K562	blood:
8	chr6:31691508..31694089-chr6:31833042..31835774,2	K562	blood:
9	chr6:31630209..31635577-chr6:31828786..31834874,28	K562	blood:
10	chr6:31830083..31833987-chr6:31862759..31865610,4	MCF-7	breast:
11	chr6:31800580..31812447-chr6:31823435..31837480,47	K562	blood:
12	chr6:31801090..31813654-chr6:31824519..31834411,41	MCF-7	breast:
13	chr6:31793544..31795489-chr6:31833591..31835312,2	K562	blood:
14	chr6:31630694..31635339-chr6:31828920..31834068,22	K562	blood:
15	chr6:31617566..31630444-chr6:31823885..31836000,84	K562	blood:
16	chr6:31833334..31835178-chr6:31835545..31837439,2	MCF-7	breast:
17	chr6:31831274..31833961-chr6:31853684..31856241,2	K562	blood:
18	chr6:31828958..31833712-chr6:31836982..31839801,4	MCF-7	breast:
19	chr6:31617566..31622844-chr6:31826455..31835211,65	K562	blood:
20	chr6:31802713..31804278-chr6:31833454..31835678,2	K562	blood:

Variant related genes	Relation type
NEU1	TF binding region
SLC44A4	TF binding region
ENSG00000204385	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000201754	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000168477	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000227198	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000204427	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28399975	0.92[AFR][1000 genomes]
rs35770494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61730575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
9	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
10	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
12	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
13	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
14	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
16	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
17	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
18	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
19	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
20	nsv462874	chr6:31794592-31864304	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
21	nsv601959	chr6:31794592-31864304	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
22	nsv884472	chr6:31813898-31870856	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
23	nsv508399	chr6:31829474-31902423	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31830800-31845200	Weak transcription	Small Intestine	intestine
2	chr6:31831000-31834200	Genic enhancers	Stomach Mucosa	stomach
3	chr6:31831800-31834000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:31831800-31845000	Weak transcription	Lung	lung
5	chr6:31832000-31833800	Enhancers	Liver	Liver
6	chr6:31832000-31835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:31832000-31842600	Strong transcription	Colonic Mucosa	Colon
8	chr6:31832000-31856000	Weak transcription	Right Atrium	heart
9	chr6:31832200-31833800	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:31832200-31833800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:31832200-31834000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:31832200-31834000	Enhancers	Placenta	Placenta
13	chr6:31832200-31842800	Strong transcription	Fetal Intestine Small	intestine
14	chr6:31832400-31834000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:31832400-31835800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:31832400-31836000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:31832400-31836600	Weak transcription	Pancreas	Pancrea
18	chr6:31832400-31838400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:31832400-31838600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:31832400-31840000	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:31832400-31840600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr6:31832400-31840600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr6:31832400-31847400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:31832400-31847600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:31832400-31847600	Weak transcription	NH-A	brain
26	chr6:31832400-31848200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:31832400-31850800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:31832600-31833800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:31832600-31833800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:31832600-31834000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:31832600-31834200	Strong transcription	Fetal Stomach	stomach
32	chr6:31832600-31838000	Weak transcription	Spleen	Spleen
33	chr6:31832600-31838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:31833000-31834000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:31833000-31838600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:31833000-31847400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:31833200-31833800	Genic enhancers	K562	blood
38	chr6:31833200-31834200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr6:31833200-31836600	Weak transcription	Fetal Thymus	thymus
40	chr6:31833200-31838600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:31833200-31864200	Weak transcription	Fetal Heart	heart
42	chr6:31833400-31834200	Genic enhancers	Fetal Intestine Large	intestine
43	chr6:31833400-31835800	Weak transcription	Hela-S3	cervix
44	chr6:31833400-31837000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:31833400-31838200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:31833400-31838400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:31833600-31833800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:31833600-31834200	Genic enhancers	Gastric	stomach
49	chr6:31833600-31834200	Weak transcription	A549	lung
50	chr6:31833600-31834400	Flanking Active TSS	HepG2	liver

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