Variant report

Variant	rs6916878
Chromosome Location	chr6:27551316-27551317
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1022486	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10807026	0.98[ASN][1000 genomes]
rs10807029	0.86[ASN][1000 genomes]
rs10946935	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10946938	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10946940	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs12197514	0.88[ASN][1000 genomes]
rs2056924	0.83[JPT][hapmap]
rs2294480	0.91[JPT][hapmap]
rs2294481	0.88[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4272217	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713112	0.96[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs4713113	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62401383	0.92[ASN][1000 genomes]
rs6456799	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs67734963	0.92[ASN][1000 genomes]
rs6908295	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914981	0.85[ASN][1000 genomes]
rs6915266	0.95[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs6915987	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs6918038	0.86[ASN][1000 genomes]
rs6921256	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs6933926	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6934437	0.88[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6934794	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7764081	0.94[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7769662	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7774939	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7775817	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348772	0.83[JPT][hapmap]
rs9357042	0.83[ASN][1000 genomes]
rs9380007	0.83[JPT][hapmap]
rs9393830	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9393831	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs9468156	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv883509	chr6:27492906-27586181	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1018107	chr6:27503525-27596736	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv538168	chr6:27503525-27596736	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27550200-27551400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:27550400-27551400	Active TSS	A549	lung
3	chr6:27550400-27551600	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:27550400-27551800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:27550400-27551800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:27550400-27552000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr6:27550400-27552000	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:27550400-27552200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:27550400-27552200	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:27550400-27552200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:27550400-27552400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:27550600-27551400	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:27550600-27551400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:27550600-27551400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:27550600-27551600	Active TSS	NHEK	skin
16	chr6:27550600-27551800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:27550800-27551600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:27550800-27551600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:27551000-27551600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:27551000-27551600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:27551000-27552000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:27551200-27551400	Active TSS	Hela-S3	cervix
23	chr6:27551200-27551400	Active TSS	HepG2	liver
24	chr6:27551200-27551800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:27551200-27551800	Active TSS	K562	blood

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