Variant report
Variant | rs7774939 |
---|---|
Chromosome Location | chr6:27547792-27547793 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs1022486 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10807026 | 0.97[ASN][1000 genomes] |
rs10807029 | 0.85[ASN][1000 genomes] |
rs10946935 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap] |
rs10946938 | 0.89[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10946940 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs12197514 | 0.87[ASN][1000 genomes] |
rs2056924 | 0.91[JPT][hapmap] |
rs2294480 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
rs2294481 | 0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs4272217 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4713112 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
rs4713113 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4713120 | 0.81[CHD][hapmap];0.86[JPT][hapmap] |
rs62401383 | 0.91[ASN][1000 genomes] |
rs6456799 | 0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rs67734963 | 0.91[ASN][1000 genomes] |
rs6908295 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6914981 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs6915266 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
rs6915987 | 0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
rs6916878 | 0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap] |
rs6918038 | 0.85[ASN][1000 genomes] |
rs6921256 | 0.87[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap] |
rs6933926 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6934437 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6934794 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7764081 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7769662 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7775817 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9295747 | 0.83[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
rs9348772 | 0.93[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap] |
rs9357042 | 0.83[ASN][1000 genomes] |
rs9380007 | 0.88[CHD][hapmap];0.91[JPT][hapmap] |
rs9393830 | 0.86[CHB][hapmap];0.89[JPT][hapmap] |
rs9393831 | 0.88[ASW][hapmap];0.93[CEU][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap] |
rs9468156 | 0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1022797 | chr6:27396961-27864277 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 390 gene(s) | inside rSNPs | diseases |
2 | nsv830617 | chr6:27424769-27598595 | Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
3 | nsv462665 | chr6:27458013-27547792 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
4 | nsv601203 | chr6:27458013-27547792 | Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
5 | nsv1030256 | chr6:27477726-27605842 | Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
6 | nsv1025862 | chr6:27480227-27605321 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
7 | nsv1017347 | chr6:27483816-27605842 | Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
8 | nsv1025572 | chr6:27487852-27604454 | Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
9 | nsv538167 | chr6:27487852-27604454 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
10 | nsv883509 | chr6:27492906-27586181 | Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
11 | nsv1018107 | chr6:27503525-27596736 | Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
12 | nsv538168 | chr6:27503525-27596736 | Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:27543800-27550200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr6:27544000-27551200 | Weak transcription | Hela-S3 | cervix |
3 | chr6:27546800-27551200 | Weak transcription | K562 | blood |