Variant report

Variant	rs6916936
Chromosome Location	chr6:37003402-37003403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37002275..37004060-chr6:37151361..37154131,2	K562	blood:
2	chr6:36998830..37003518-chr6:37005337..37008054,4	K562	blood:
3	chr6:36998448..37001378-chr6:37003343..37005292,2	K562	blood:
4	chr6:37001432..37004372-chr6:37005152..37007455,4	K562	blood:
5	chr6:37001172..37003656-chr6:37177575..37179330,2	K562	blood:

Variant related genes	Relation type
ENSG00000252687	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1150791	1.00[ASN][1000 genomes]
rs11755152	0.82[CEU][hapmap]
rs61621623	0.84[AFR][1000 genomes]
rs6457966	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457967	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411533	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6916936	FGD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36986800-37006600	Weak transcription	Colonic Mucosa	Colon
2	chr6:36988600-37006600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36990200-37006600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:36992600-37005800	Weak transcription	Liver	Liver
5	chr6:36992800-37006600	Weak transcription	Gastric	stomach
6	chr6:36993800-37018200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:36995800-37006600	Weak transcription	Lung	lung
8	chr6:36997400-37013800	Weak transcription	Esophagus	oesophagus
9	chr6:36998800-37006200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:37000400-37015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:37001600-37007600	Weak transcription	GM12878-XiMat	blood
12	chr6:37002000-37005400	Weak transcription	Spleen	Spleen
13	chr6:37002000-37006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:37002000-37006000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:37002000-37006800	Weak transcription	Pancreas	Pancrea
16	chr6:37002000-37009200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:37002200-37006200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:37002400-37008600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:37002400-37014400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:37002600-37006200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:37002600-37006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:37002600-37007400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:37003000-37006200	Weak transcription	Primary B cells from cord blood	blood
24	chr6:37003000-37006600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:37003000-37006600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:37003200-37005800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:37003400-37004200	Enhancers	K562	blood

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