Variant report

Variant	rs73411533
Chromosome Location	chr6:37006255-37006256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37005931..37008041-chr6:37135781..37138357,2	K562	blood:
2	chr6:36998830..37003518-chr6:37005337..37008054,4	K562	blood:
3	chr6:37005187..37007836-chr6:37021665..37024066,2	K562	blood:
4	chr6:36998684..37000446-chr6:37006234..37008054,3	K562	blood:
5	chr6:37004960..37006542-chr6:37018559..37021481,2	K562	blood:
6	chr6:37005917..37007754-chr6:37015000..37017785,2	K562	blood:
7	chr6:37005301..37010530-chr6:37136048..37140113,4	K562	blood:
8	chr6:37001432..37004372-chr6:37005152..37007455,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1150791	1.00[ASN][1000 genomes]
rs61621623	0.87[AFR][1000 genomes]
rs6457966	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916936	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36986800-37006600	Weak transcription	Colonic Mucosa	Colon
2	chr6:36988600-37006600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36990200-37006600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:36992800-37006600	Weak transcription	Gastric	stomach
5	chr6:36993800-37018200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:36995800-37006600	Weak transcription	Lung	lung
7	chr6:36997400-37013800	Weak transcription	Esophagus	oesophagus
8	chr6:37000400-37015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:37001600-37007600	Weak transcription	GM12878-XiMat	blood
10	chr6:37002000-37006800	Weak transcription	Pancreas	Pancrea
11	chr6:37002000-37009200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:37002400-37008600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:37002400-37014400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:37002600-37006400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:37002600-37007400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:37003000-37006600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:37003000-37006600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr6:37005800-37007200	Enhancers	Liver	Liver
19	chr6:37006000-37006600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:37006000-37006600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:37006000-37006800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:37006000-37006800	Enhancers	Stomach Smooth Muscle	stomach
23	chr6:37006000-37006800	Flanking Active TSS	K562	blood
24	chr6:37006000-37007400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:37006200-37006400	Strong transcription	Primary B cells from cord blood	blood
26	chr6:37006200-37006600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:37006200-37006600	Enhancers	Brain Anterior Caudate	brain
28	chr6:37006200-37006600	Enhancers	Fetal Heart	heart
29	chr6:37006200-37006600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:37006200-37006800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:37006200-37006800	Enhancers	Adipose Nuclei	Adipose
32	chr6:37006200-37006800	Enhancers	Colon Smooth Muscle	Colon
33	chr6:37006200-37006800	Enhancers	Fetal Muscle Leg	muscle
34	chr6:37006200-37006800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:37006200-37006800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:37006200-37006800	Enhancers	Dnd41	blood
37	chr6:37006200-37006800	Enhancers	HMEC	breast
38	chr6:37006200-37006800	Enhancers	NHEK	skin
39	chr6:37006200-37008400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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