Variant report

Variant	rs6918181
Chromosome Location	chr6:38107258-38107259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38100684..38103465-chr6:38103538..38107352,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11961284	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs13437101	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs55749139	0.87[AFR][1000 genomes]
rs55933649	0.90[AFR][1000 genomes]
rs57327758	0.85[AFR][1000 genomes]
rs57965615	0.87[AFR][1000 genomes]
rs60249007	0.83[AFR][1000 genomes]
rs60774419	0.87[AFR][1000 genomes]
rs60997161	0.83[AFR][1000 genomes]
rs6904932	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6917912	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs6918445	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6918779	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6919188	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6924117	1.00[YRI][hapmap]
rs6941852	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730859	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73730865	0.89[AFR][1000 genomes]
rs73730877	0.87[AFR][1000 genomes]
rs73730881	0.90[AFR][1000 genomes]
rs73730883	0.87[AFR][1000 genomes]
rs73730892	0.87[AFR][1000 genomes]
rs73730893	0.87[AFR][1000 genomes]
rs73730896	0.87[AFR][1000 genomes]
rs73730897	0.87[AFR][1000 genomes]
rs73734310	0.83[AFR][1000 genomes]
rs7747924	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs7767077	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs7770297	0.90[AFR][1000 genomes]
rs7773080	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs9296235	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9462381	0.85[AFR][1000 genomes]
rs9462383	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs9462384	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs9462385	0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462386	0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462387	0.87[AFR][1000 genomes]
rs9462388	0.87[AFR][1000 genomes]
rs9462390	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs9470731	1.00[YRI][hapmap]
rs9470736	1.00[YRI][hapmap]
rs9470744	1.00[YRI][hapmap]
rs9470745	0.81[AFR][1000 genomes]
rs9470757	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9470766	0.90[AFR][1000 genomes]
rs9470770	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9470771	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs9470774	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs9470781	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9470783	0.85[AFR][1000 genomes]
rs9470786	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9470787	0.87[AFR][1000 genomes]
rs9470789	1.00[YRI][hapmap]
rs9470791	0.87[AFR][1000 genomes]
rs9470792	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470795	0.87[AFR][1000 genomes]
rs9470797	0.87[AFR][1000 genomes]
rs9470799	0.85[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv524213	chr6:38106844-38160627	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38057200-38109200	Weak transcription	K562	blood
2	chr6:38060000-38108200	Weak transcription	Ovary	ovary
3	chr6:38072200-38108400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:38075200-38118200	Weak transcription	Colonic Mucosa	Colon
5	chr6:38078800-38109000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:38078800-38111000	Weak transcription	Fetal Kidney	kidney
7	chr6:38078800-38111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:38079600-38113800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:38081800-38121800	Weak transcription	Psoas Muscle	Psoas
10	chr6:38084000-38122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:38084600-38124200	Weak transcription	Hela-S3	cervix
12	chr6:38087600-38118800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:38090000-38111000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:38091200-38119800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:38091400-38109400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:38091400-38110200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:38091400-38110400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:38091400-38116000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:38091400-38141800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:38091800-38109600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:38092600-38109000	Weak transcription	Lung	lung
22	chr6:38092800-38112200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:38092800-38117000	Weak transcription	Spleen	Spleen
24	chr6:38095200-38108000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:38095200-38122600	Weak transcription	A549	lung
26	chr6:38095800-38109000	Weak transcription	Liver	Liver
27	chr6:38096000-38116000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:38099600-38117800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:38099800-38111000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:38099800-38119600	Weak transcription	Aorta	Aorta
31	chr6:38100000-38112800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:38100200-38111000	Weak transcription	HSMMtube	muscle
33	chr6:38100200-38111200	Weak transcription	HMEC	breast
34	chr6:38100400-38110800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:38100400-38113600	Weak transcription	NHLF	lung
36	chr6:38100600-38110600	Weak transcription	HSMM	muscle
37	chr6:38100600-38114000	Weak transcription	NH-A	brain
38	chr6:38101200-38113800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:38102400-38107800	Strong transcription	Fetal Stomach	stomach
40	chr6:38102800-38107800	Weak transcription	HepG2	liver
41	chr6:38102800-38108800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:38102800-38109600	Weak transcription	Right Atrium	heart
43	chr6:38102800-38110200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:38103000-38110000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:38103000-38110400	Weak transcription	Osteobl	bone
46	chr6:38103000-38110800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:38103000-38111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:38103000-38127200	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:38103200-38111000	Weak transcription	Adipose Nuclei	Adipose
50	chr6:38103200-38112800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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