Variant report

Variant	rs9470757
Chromosome Location	chr6:38027086-38027087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10046397	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10080245	1.00[EUR][1000 genomes]
rs11759344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961284	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12663406	1.00[EUR][1000 genomes]
rs12663450	1.00[EUR][1000 genomes]
rs12665229	1.00[EUR][1000 genomes]
rs13437101	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55749139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55890079	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs55933649	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56739079	1.00[EUR][1000 genomes]
rs56957219	1.00[EUR][1000 genomes]
rs56958593	1.00[EUR][1000 genomes]
rs57327758	0.87[AFR][1000 genomes]
rs57953063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57965615	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58305294	1.00[EUR][1000 genomes]
rs58698408	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58860274	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59074919	1.00[EUR][1000 genomes]
rs59170481	1.00[EUR][1000 genomes]
rs59430914	1.00[EUR][1000 genomes]
rs60075988	1.00[EUR][1000 genomes]
rs60249007	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60774419	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60997161	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6904932	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6906120	1.00[EUR][1000 genomes]
rs6912045	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6917912	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918181	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6918445	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918779	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919188	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924117	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs6926669	1.00[EUR][1000 genomes]
rs6941852	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730823	1.00[EUR][1000 genomes]
rs73730827	1.00[EUR][1000 genomes]
rs73730832	1.00[EUR][1000 genomes]
rs73730849	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730859	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730865	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730877	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730883	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730893	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730896	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73734310	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73734311	1.00[AMR][1000 genomes]
rs73734319	1.00[EUR][1000 genomes]
rs73734320	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73734323	1.00[EUR][1000 genomes]
rs7745340	1.00[EUR][1000 genomes]
rs7747924	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748913	1.00[EUR][1000 genomes]
rs7756841	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7765448	1.00[EUR][1000 genomes]
rs7767077	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7769848	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7770297	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773080	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9296235	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462370	1.00[EUR][1000 genomes]
rs9462371	1.00[EUR][1000 genomes]
rs9462375	1.00[EUR][1000 genomes]
rs9462381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462382	1.00[AMR][1000 genomes]
rs9462383	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462384	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462385	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462386	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462387	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462390	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462397	1.00[EUR][1000 genomes]
rs9470722	1.00[EUR][1000 genomes]
rs9470729	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9470731	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9470733	1.00[EUR][1000 genomes]
rs9470736	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9470744	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470745	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470766	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470770	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470771	0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470774	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470781	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470783	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470786	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470789	1.00[YRI][hapmap]
rs9470790	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9470791	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470795	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470797	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470799	0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37985000-38030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:37998600-38029200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:38001000-38028600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:38002400-38029400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:38004200-38029200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:38008400-38028400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:38010600-38029000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:38011800-38029400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:38012400-38029400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:38015400-38029600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:38015600-38029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:38016200-38029400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:38017200-38055000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:38017400-38031000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:38018400-38030000	Weak transcription	Fetal Intestine Small	intestine
16	chr6:38019000-38031800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:38019400-38029400	Weak transcription	Right Ventricle	heart
18	chr6:38019400-38029400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:38020000-38029400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:38020200-38029200	Weak transcription	A549	lung
21	chr6:38020200-38030000	Weak transcription	Fetal Brain Female	brain
22	chr6:38020400-38046200	Weak transcription	Stomach Mucosa	stomach
23	chr6:38020800-38029400	Weak transcription	Spleen	Spleen
24	chr6:38021000-38029200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:38021400-38029400	Weak transcription	Esophagus	oesophagus
26	chr6:38021400-38029400	Weak transcription	Left Ventricle	heart
27	chr6:38021400-38029400	Weak transcription	Lung	lung
28	chr6:38022600-38030000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:38023000-38054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:38023200-38029200	Weak transcription	K562	blood
31	chr6:38023200-38029400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:38023200-38029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:38023200-38029800	Weak transcription	Brain Anterior Caudate	brain
34	chr6:38023200-38052800	Weak transcription	Gastric	stomach
35	chr6:38023400-38029400	Weak transcription	Pancreas	Pancrea
36	chr6:38023600-38029600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:38024000-38029400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:38024400-38029400	Weak transcription	Liver	Liver
39	chr6:38024400-38029400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:38024400-38029600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:38024400-38033200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr6:38024400-38040000	Weak transcription	Fetal Heart	heart
43	chr6:38024600-38028600	Weak transcription	Ovary	ovary
44	chr6:38024600-38029400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:38024600-38029400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:38024600-38029400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:38024600-38029400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:38024600-38029400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:38024600-38029400	Weak transcription	Aorta	Aorta
50	chr6:38024600-38030800	Weak transcription	Brain Angular Gyrus	brain

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