Variant report

Variant	rs73730827
Chromosome Location	chr6:37879571-37879572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37874214..37875957-chr6:37876729..37879670,2	K562	blood:
2	chr6:37873838..37876151-chr6:37878592..37881455,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10046397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080245	1.00[EUR][1000 genomes]
rs11961284	1.00[EUR][1000 genomes]
rs12178911	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55933649	1.00[EUR][1000 genomes]
rs56958593	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57527781	0.96[AFR][1000 genomes]
rs58305294	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58698408	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58860274	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60774419	1.00[EUR][1000 genomes]
rs60997161	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6904932	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6906120	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912045	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6917912	1.00[EUR][1000 genomes]
rs6918445	1.00[EUR][1000 genomes]
rs6924117	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926669	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730817	0.83[AFR][1000 genomes]
rs73730818	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730823	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730832	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730849	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730859	1.00[EUR][1000 genomes]
rs73730877	1.00[EUR][1000 genomes]
rs73730883	1.00[EUR][1000 genomes]
rs7756841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765448	1.00[EUR][1000 genomes]
rs7769848	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7770297	1.00[EUR][1000 genomes]
rs9462362	1.00[EUR][1000 genomes]
rs9462367	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462370	1.00[EUR][1000 genomes]
rs9462371	1.00[EUR][1000 genomes]
rs9462375	1.00[EUR][1000 genomes]
rs9470711	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470715	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470716	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470717	0.91[AFR][1000 genomes]
rs9470719	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470722	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470731	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470733	1.00[EUR][1000 genomes]
rs9470736	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470744	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470745	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470757	1.00[EUR][1000 genomes]
rs9470766	1.00[EUR][1000 genomes]
rs9470770	1.00[EUR][1000 genomes]
rs9470771	1.00[EUR][1000 genomes]
rs9470781	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv970036	chr6:37876765-37894762	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37850600-37890400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:37851000-37884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:37857600-37886000	Weak transcription	Esophagus	oesophagus
4	chr6:37857600-37895400	Weak transcription	Pancreas	Pancrea
5	chr6:37862400-37884000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:37862600-37882000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:37864600-37880800	Weak transcription	NHDF-Ad	bronchial
8	chr6:37865600-37879600	Weak transcription	Thymus	Thymus
9	chr6:37866000-37885600	Weak transcription	Hela-S3	cervix
10	chr6:37872000-37887600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:37872000-37888200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:37872000-37890400	Weak transcription	Small Intestine	intestine
13	chr6:37872200-37883000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:37872200-37884000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:37872200-37884600	Weak transcription	Fetal Kidney	kidney
16	chr6:37872400-37883000	Weak transcription	Brain Substantia Nigra	brain
17	chr6:37872600-37879600	Weak transcription	Psoas Muscle	Psoas
18	chr6:37872600-37885200	Weak transcription	HepG2	liver
19	chr6:37872600-37896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:37872800-37880600	Weak transcription	HMEC	breast
21	chr6:37872800-37880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:37873000-37882600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:37873200-37887400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:37873400-37929200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:37874000-37888400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:37874200-37884600	Weak transcription	A549	lung
27	chr6:37874400-37880800	Weak transcription	Osteobl	bone
28	chr6:37874400-37887600	Weak transcription	Spleen	Spleen
29	chr6:37874400-37888200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:37874600-37880400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:37874600-37903800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:37874800-37881600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:37875000-37880600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:37875400-37879600	Weak transcription	Right Ventricle	heart
35	chr6:37875400-37880200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr6:37876000-37880800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:37876600-37879800	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:37876600-37880400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:37876600-37903200	Weak transcription	Dnd41	blood
40	chr6:37877200-37879800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr6:37877400-37880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:37877600-37882800	Weak transcription	Liver	Liver
43	chr6:37877600-37884000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:37877800-37880000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr6:37877800-37881400	Enhancers	Primary T cells from cord blood	blood
46	chr6:37877800-37881800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:37878000-37879600	Weak transcription	Left Ventricle	heart
48	chr6:37878000-37883200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr6:37878000-37883200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:37878200-37879600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links