Variant report

Variant	rs9462367
Chromosome Location	chr6:37801469-37801470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10046397	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10080245	1.00[EUR][1000 genomes]
rs12178911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56958593	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57527781	0.94[AFR][1000 genomes]
rs58305294	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58698408	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58860274	1.00[EUR][1000 genomes]
rs60997161	1.00[EUR][1000 genomes]
rs6904932	1.00[EUR][1000 genomes]
rs6906120	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6912045	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6924117	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930823	0.90[AMR][1000 genomes]
rs73730817	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73730818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730823	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730827	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730832	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730849	1.00[EUR][1000 genomes]
rs7756841	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765448	1.00[EUR][1000 genomes]
rs7769848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462362	1.00[EUR][1000 genomes]
rs9462370	1.00[EUR][1000 genomes]
rs9462371	1.00[EUR][1000 genomes]
rs9462375	1.00[EUR][1000 genomes]
rs9470707	0.90[AMR][1000 genomes]
rs9470711	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470719	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470729	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470731	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470733	1.00[EUR][1000 genomes]
rs9470736	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470744	1.00[EUR][1000 genomes]
rs9470745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37791400-37801800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:37791400-37801800	Weak transcription	Fetal Brain Female	brain
4	chr6:37791400-37801800	Weak transcription	A549	lung
5	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:37792400-37801800	Weak transcription	Fetal Brain Male	brain
9	chr6:37793800-37801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:37793800-37813600	Weak transcription	NH-A	brain
11	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:37794400-37805200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:37795000-37813800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:37795800-37802200	Weak transcription	NHLF	lung
16	chr6:37795800-37813400	Weak transcription	HSMMtube	muscle
17	chr6:37796000-37812800	Weak transcription	Colonic Mucosa	Colon
18	chr6:37796000-37813200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:37796000-37813800	Weak transcription	NHDF-Ad	bronchial
20	chr6:37796000-37815600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
23	chr6:37796200-37801600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:37796200-37801600	Weak transcription	Fetal Lung	lung
25	chr6:37796200-37801800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:37796200-37801800	Weak transcription	Fetal Kidney	kidney
27	chr6:37796200-37802400	Weak transcription	Fetal Intestine Large	intestine
28	chr6:37796200-37811400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:37796200-37813200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:37796400-37803400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr6:37797800-37808200	Weak transcription	Brain Anterior Caudate	brain
32	chr6:37798000-37801800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:37798200-37801600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:37798200-37801800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:37798400-37803400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:37798400-37805600	Weak transcription	Osteobl	bone
37	chr6:37798400-37812800	Weak transcription	HSMM	muscle
38	chr6:37798400-37815200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:37798400-37815800	Weak transcription	Fetal Heart	heart
40	chr6:37798800-37801800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:37799000-37808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:37799200-37801800	Weak transcription	Dnd41	blood
43	chr6:37799400-37817400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:37799600-37801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:37799600-37801800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:37799600-37806600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:37799600-37808000	Weak transcription	K562	blood
48	chr6:37799600-37809400	Weak transcription	Lung	lung
49	chr6:37799600-37811200	Weak transcription	Brain Substantia Nigra	brain
50	chr6:37799600-37811800	Weak transcription	Placenta	Placenta

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