Variant report

Variant	rs9470707
Chromosome Location	chr6:37768891-37768892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12178911	0.90[AMR][1000 genomes]
rs2842518	1.00[TSI][hapmap]
rs56958593	0.90[AMR][1000 genomes]
rs6926669	0.90[AMR][1000 genomes]
rs6930823	0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730818	0.90[AMR][1000 genomes]
rs73730823	0.90[AMR][1000 genomes]
rs7769848	0.90[AMR][1000 genomes]
rs9462367	0.90[AMR][1000 genomes]
rs9470711	0.90[AMR][1000 genomes]
rs9470715	0.90[AMR][1000 genomes]
rs9470716	1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs9470717	0.90[AMR][1000 genomes]
rs9470719	0.90[AMR][1000 genomes]
rs9470722	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37767800-37769600	Weak transcription	Aorta	Aorta
5	chr6:37768400-37769000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:37768600-37769000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:37768600-37769000	Enhancers	Fetal Muscle Trunk	muscle
8	chr6:37768600-37769200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37768600-37769200	Enhancers	Fetal Kidney	kidney
10	chr6:37768800-37769000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:37768800-37769000	Bivalent Enhancer	Fetal Stomach	stomach
12	chr6:37768800-37769200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:37768800-37769200	Flanking Active TSS	HepG2	liver
14	chr6:37768800-37769600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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