Variant report

Variant	rs9470722
Chromosome Location	chr6:37818881-37818882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37786481..37788955-chr6:37817601..37820838,4	MCF-7	breast:
2	chr6:37814297..37817190-chr6:37817323..37820786,4	K562	blood:
3	chr6:37785801..37789989-chr6:37816126..37822901,7	MCF-7	breast:
4	chr6:37818045..37820305-chr6:37826347..37828622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10046397	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10080245	1.00[EUR][1000 genomes]
rs12178911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56958593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57527781	1.00[AFR][1000 genomes]
rs58305294	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58698408	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58860274	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60997161	1.00[EUR][1000 genomes]
rs6904932	1.00[EUR][1000 genomes]
rs6906120	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6912045	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6924117	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930823	0.90[AMR][1000 genomes]
rs73730817	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73730818	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730827	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730832	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730849	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730859	1.00[EUR][1000 genomes]
rs7756841	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7765448	1.00[EUR][1000 genomes]
rs7769848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462362	1.00[EUR][1000 genomes]
rs9462367	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462370	1.00[EUR][1000 genomes]
rs9462371	1.00[EUR][1000 genomes]
rs9462375	1.00[EUR][1000 genomes]
rs9470707	0.90[AMR][1000 genomes]
rs9470711	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470729	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470731	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470733	1.00[EUR][1000 genomes]
rs9470736	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470744	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470745	1.00[EUR][1000 genomes]
rs9470757	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
6	chr6:37799600-37825800	Weak transcription	Esophagus	oesophagus
7	chr6:37799800-37825400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:37800200-37830200	Weak transcription	Ovary	ovary
9	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:37802600-37834400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:37803000-37823800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:37806800-37830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
15	chr6:37808600-37832600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:37809400-37823400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:37809600-37825400	Weak transcription	Aorta	Aorta
18	chr6:37811000-37823600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:37812000-37831400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:37812000-37832600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:37812200-37830200	Weak transcription	Thymus	Thymus
22	chr6:37812400-37830800	Weak transcription	Fetal Thymus	thymus
23	chr6:37812600-37836000	Weak transcription	Fetal Intestine Small	intestine
24	chr6:37813600-37819800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:37813600-37845200	Weak transcription	K562	blood
26	chr6:37814000-37826600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:37814000-37828600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:37814000-37830800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:37814000-37835400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:37814200-37819200	Weak transcription	Fetal Kidney	kidney
31	chr6:37814200-37820600	Enhancers	Liver	Liver
32	chr6:37814200-37824000	Weak transcription	HSMM	muscle
33	chr6:37814200-37824000	Weak transcription	Osteobl	bone
34	chr6:37814200-37824800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:37814200-37833400	Weak transcription	HSMMtube	muscle
36	chr6:37814400-37819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:37814400-37819800	Weak transcription	HepG2	liver
38	chr6:37814400-37819800	Weak transcription	HMEC	breast
39	chr6:37814400-37819800	Weak transcription	NHEK	skin
40	chr6:37814400-37825400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:37814400-37825400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:37814400-37825400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:37814400-37830800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:37814400-37831000	Weak transcription	Primary T cells from cord blood	blood
45	chr6:37815000-37819600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:37816000-37819800	Weak transcription	Brain Angular Gyrus	brain
47	chr6:37816000-37821000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr6:37816200-37819000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:37816200-37819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:37816400-37819600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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