Variant report

Variant	rs7765448
Chromosome Location	chr6:37926170-37926171
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37924674..37926815-chr6:37929494..37931459,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10046397	1.00[EUR][1000 genomes]
rs10080245	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11961284	1.00[EUR][1000 genomes]
rs12178911	1.00[EUR][1000 genomes]
rs13437101	1.00[EUR][1000 genomes]
rs55933649	1.00[EUR][1000 genomes]
rs56739079	1.00[EUR][1000 genomes]
rs56958593	1.00[EUR][1000 genomes]
rs58305294	1.00[EUR][1000 genomes]
rs58698408	1.00[EUR][1000 genomes]
rs58860274	1.00[EUR][1000 genomes]
rs59430914	1.00[EUR][1000 genomes]
rs60774419	1.00[EUR][1000 genomes]
rs60997161	1.00[EUR][1000 genomes]
rs6904932	1.00[EUR][1000 genomes]
rs6906120	1.00[EUR][1000 genomes]
rs6912045	1.00[EUR][1000 genomes]
rs6917912	1.00[EUR][1000 genomes]
rs6918445	1.00[EUR][1000 genomes]
rs6924117	1.00[EUR][1000 genomes]
rs6926669	1.00[EUR][1000 genomes]
rs73730818	1.00[EUR][1000 genomes]
rs73730823	1.00[EUR][1000 genomes]
rs73730827	1.00[EUR][1000 genomes]
rs73730832	1.00[EUR][1000 genomes]
rs73730849	1.00[EUR][1000 genomes]
rs73730859	1.00[EUR][1000 genomes]
rs73730877	1.00[EUR][1000 genomes]
rs73730883	1.00[EUR][1000 genomes]
rs73730892	1.00[EUR][1000 genomes]
rs73730893	1.00[EUR][1000 genomes]
rs73730896	1.00[EUR][1000 genomes]
rs73730897	1.00[EUR][1000 genomes]
rs73734319	1.00[EUR][1000 genomes]
rs73734320	1.00[EUR][1000 genomes]
rs7747924	1.00[EUR][1000 genomes]
rs7756841	1.00[EUR][1000 genomes]
rs7768919	0.87[AFR][1000 genomes]
rs7769848	1.00[EUR][1000 genomes]
rs7770297	1.00[EUR][1000 genomes]
rs9462362	1.00[EUR][1000 genomes]
rs9462367	1.00[EUR][1000 genomes]
rs9462370	1.00[EUR][1000 genomes]
rs9462371	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462390	1.00[EUR][1000 genomes]
rs9470711	1.00[EUR][1000 genomes]
rs9470715	1.00[EUR][1000 genomes]
rs9470716	1.00[EUR][1000 genomes]
rs9470719	1.00[EUR][1000 genomes]
rs9470722	1.00[EUR][1000 genomes]
rs9470729	1.00[EUR][1000 genomes]
rs9470731	1.00[EUR][1000 genomes]
rs9470733	1.00[EUR][1000 genomes]
rs9470736	1.00[EUR][1000 genomes]
rs9470744	1.00[EUR][1000 genomes]
rs9470745	1.00[EUR][1000 genomes]
rs9470746	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470757	1.00[EUR][1000 genomes]
rs9470766	1.00[EUR][1000 genomes]
rs9470770	1.00[EUR][1000 genomes]
rs9470771	1.00[EUR][1000 genomes]
rs9470781	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37873400-37929200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:37880200-37930000	Weak transcription	Thymus	Thymus
3	chr6:37887600-37933200	Weak transcription	NHDF-Ad	bronchial
4	chr6:37892600-37928800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:37896800-37929000	Weak transcription	Esophagus	oesophagus
6	chr6:37904800-37933400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:37907000-37926600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:37911000-37933200	Weak transcription	NHEK	skin
9	chr6:37911600-37928600	Weak transcription	Lung	lung
10	chr6:37911600-37935400	Weak transcription	Primary B cells from cord blood	blood
11	chr6:37911600-37936200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:37917000-37928800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:37917800-37928600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:37918200-37926800	Weak transcription	Gastric	stomach
15	chr6:37920000-37933600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:37920600-37928000	Weak transcription	Primary T cells from cord blood	blood
17	chr6:37920600-37928000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:37920800-37930600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:37921000-37933000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:37922200-37933400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:37922600-37939000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:37922800-37928600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:37922800-37938600	Weak transcription	Fetal Lung	lung
24	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:37923000-37926800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:37923000-37927000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:37923000-37928800	Weak transcription	Pancreas	Pancrea
29	chr6:37923000-37939000	Weak transcription	Ovary	ovary
30	chr6:37923200-37926800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:37923200-37928400	Weak transcription	Brain Angular Gyrus	brain
32	chr6:37923400-37931200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:37923600-37927800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:37923600-37938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
36	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:37923800-37926400	Weak transcription	Small Intestine	intestine
38	chr6:37923800-37926600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:37923800-37926600	Weak transcription	GM12878-XiMat	blood
40	chr6:37923800-37926800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:37923800-37934200	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:37924400-37932400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:37924600-37941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:37924800-37926600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:37924800-37928200	Weak transcription	Right Atrium	heart
46	chr6:37924800-37928800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:37924800-37928800	Weak transcription	Spleen	Spleen
48	chr6:37925000-37926800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:37925000-37928800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:37925000-37928800	Weak transcription	Left Ventricle	heart

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