Variant report

Variant	rs9462375
Chromosome Location	chr6:37958122-37958123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37956692..37960891-chr6:37962737..37966006,6	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10046397	1.00[EUR][1000 genomes]
rs10080245	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11759344	1.00[EUR][1000 genomes]
rs11961284	1.00[EUR][1000 genomes]
rs12178911	1.00[EUR][1000 genomes]
rs12663406	1.00[EUR][1000 genomes]
rs12663450	1.00[EUR][1000 genomes]
rs12665229	1.00[EUR][1000 genomes]
rs13437101	1.00[EUR][1000 genomes]
rs55933649	1.00[EUR][1000 genomes]
rs56739079	1.00[EUR][1000 genomes]
rs56957219	1.00[EUR][1000 genomes]
rs56958593	1.00[EUR][1000 genomes]
rs57953063	1.00[EUR][1000 genomes]
rs58305294	1.00[EUR][1000 genomes]
rs58698408	1.00[EUR][1000 genomes]
rs58860274	1.00[EUR][1000 genomes]
rs59074919	1.00[EUR][1000 genomes]
rs59170481	1.00[EUR][1000 genomes]
rs59430914	1.00[EUR][1000 genomes]
rs60075988	1.00[EUR][1000 genomes]
rs60774419	1.00[EUR][1000 genomes]
rs60997161	1.00[EUR][1000 genomes]
rs6904932	1.00[EUR][1000 genomes]
rs6906120	1.00[EUR][1000 genomes]
rs6912045	1.00[EUR][1000 genomes]
rs6917912	1.00[EUR][1000 genomes]
rs6918445	1.00[EUR][1000 genomes]
rs6924117	1.00[EUR][1000 genomes]
rs6926669	1.00[EUR][1000 genomes]
rs73730818	1.00[EUR][1000 genomes]
rs73730823	1.00[EUR][1000 genomes]
rs73730827	1.00[EUR][1000 genomes]
rs73730832	1.00[EUR][1000 genomes]
rs73730849	1.00[EUR][1000 genomes]
rs73730859	1.00[EUR][1000 genomes]
rs73730877	1.00[EUR][1000 genomes]
rs73730883	1.00[EUR][1000 genomes]
rs73730892	1.00[EUR][1000 genomes]
rs73730893	1.00[EUR][1000 genomes]
rs73730896	1.00[EUR][1000 genomes]
rs73730897	1.00[EUR][1000 genomes]
rs73734319	1.00[EUR][1000 genomes]
rs73734320	1.00[EUR][1000 genomes]
rs73734323	1.00[EUR][1000 genomes]
rs7745340	1.00[EUR][1000 genomes]
rs7747924	1.00[EUR][1000 genomes]
rs7748913	1.00[EUR][1000 genomes]
rs7756841	1.00[EUR][1000 genomes]
rs7765448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768919	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7769848	1.00[EUR][1000 genomes]
rs7770297	1.00[EUR][1000 genomes]
rs9462367	1.00[EUR][1000 genomes]
rs9462370	1.00[EUR][1000 genomes]
rs9462371	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462390	1.00[EUR][1000 genomes]
rs9462397	1.00[EUR][1000 genomes]
rs9470711	1.00[EUR][1000 genomes]
rs9470715	1.00[EUR][1000 genomes]
rs9470716	1.00[EUR][1000 genomes]
rs9470719	1.00[EUR][1000 genomes]
rs9470722	1.00[EUR][1000 genomes]
rs9470729	1.00[EUR][1000 genomes]
rs9470731	1.00[EUR][1000 genomes]
rs9470733	1.00[EUR][1000 genomes]
rs9470736	1.00[EUR][1000 genomes]
rs9470744	1.00[EUR][1000 genomes]
rs9470745	1.00[EUR][1000 genomes]
rs9470746	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470757	1.00[EUR][1000 genomes]
rs9470766	1.00[EUR][1000 genomes]
rs9470770	1.00[EUR][1000 genomes]
rs9470771	1.00[EUR][1000 genomes]
rs9470781	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:37948400-37958600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:37949800-37962000	Weak transcription	Small Intestine	intestine
4	chr6:37950000-37963600	Weak transcription	Spleen	Spleen
5	chr6:37950400-37958800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:37951800-37959800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:37952200-37961400	Enhancers	Liver	Liver
8	chr6:37952600-37958600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:37953400-37958600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:37953400-37960400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:37953400-37962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37953400-37962600	Weak transcription	Lung	lung
13	chr6:37953400-37965200	Weak transcription	Esophagus	oesophagus
14	chr6:37953600-37958600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:37954000-37958800	Enhancers	Brain Anterior Caudate	brain
16	chr6:37954000-37959600	Enhancers	HSMMtube	muscle
17	chr6:37954000-37960200	Enhancers	Colon Smooth Muscle	Colon
18	chr6:37954000-37960600	Enhancers	HSMM	muscle
19	chr6:37954200-37963000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:37954400-37960200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:37954600-37960200	Enhancers	NHLF	lung
22	chr6:37955400-37959400	Enhancers	Right Ventricle	heart
23	chr6:37955400-37959600	Enhancers	Brain Substantia Nigra	brain
24	chr6:37955400-37959600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:37955400-37960400	Enhancers	Adipose Nuclei	Adipose
26	chr6:37955400-37960400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:37955400-37960400	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:37955400-37960800	Enhancers	Rectal Smooth Muscle	rectum
29	chr6:37955600-37960000	Enhancers	NHDF-Ad	bronchial
30	chr6:37955600-37963800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:37956200-37958600	Weak transcription	Left Ventricle	heart
32	chr6:37956200-37961800	Weak transcription	Fetal Brain Female	brain
33	chr6:37956200-37962000	Weak transcription	Fetal Stomach	stomach
34	chr6:37956200-37965400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:37956200-37978800	Weak transcription	Primary T cells from cord blood	blood
36	chr6:37956400-37958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:37956400-37959400	Enhancers	Fetal Muscle Leg	muscle
38	chr6:37956400-37960200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:37956400-37961400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:37956600-37958200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:37956600-37958600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:37956600-37961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:37956600-37961800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:37956600-37962000	Weak transcription	Brain Angular Gyrus	brain
45	chr6:37956600-37962000	Weak transcription	Fetal Kidney	kidney
46	chr6:37956600-37967200	Weak transcription	Primary B cells from cord blood	blood
47	chr6:37956800-37959400	Enhancers	Psoas Muscle	Psoas
48	chr6:37956800-37959400	Enhancers	Right Atrium	heart
49	chr6:37956800-37960200	Enhancers	GM12878-XiMat	blood
50	chr6:37956800-37961600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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