The 2.0 version of rSNPBase

Variant report

Variant rs12665229
Chromosome Location chr6:38127591-38127592
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38091400-38141800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr6:38109200-38129000 Weak transcription Rectal Smooth Muscle rectum
3 chr6:38111800-38138200 Weak transcription Fetal Brain Female brain
4 chr6:38112400-38128400 Weak transcription Brain Germinal Matrix brain
5 chr6:38112400-38138200 Weak transcription Fetal Brain Male brain
6 chr6:38113000-38127800 Weak transcription H9 Cell Line embryonic stem cell
7 chr6:38113200-38134400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr6:38113200-38138000 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr6:38114400-38138200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr6:38117200-38131800 Weak transcription Stomach Mucosa stomach
11 chr6:38117600-38137200 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr6:38119400-38127800 Strong transcription Breast Myoepithelial Primary Cells Breast
13 chr6:38119800-38129400 Weak transcription Brain Cingulate Gyrus brain
14 chr6:38119800-38134800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr6:38120400-38132800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr6:38121000-38159600 Weak transcription Primary T cells fromperipheralblood blood
17 chr6:38121200-38128400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr6:38121200-38136400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr6:38121400-38136600 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr6:38121400-38141000 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr6:38121600-38127600 Weak transcription Stomach Smooth Muscle stomach
22 chr6:38121600-38128400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr6:38121600-38131600 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr6:38121600-38132600 Weak transcription Osteobl bone
25 chr6:38121600-38137800 Weak transcription Colonic Mucosa Colon
26 chr6:38121800-38132200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr6:38121800-38132600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr6:38121800-38132800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr6:38121800-38138000 Weak transcription Dnd41 blood
30 chr6:38121800-38153600 Weak transcription Primary B cells from peripheral blood blood
31 chr6:38122000-38129400 Weak transcription Liver Liver
32 chr6:38122000-38137600 Weak transcription Esophagus oesophagus
33 chr6:38122200-38134200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr6:38122800-38131400 Weak transcription Right Ventricle heart
35 chr6:38122800-38135800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr6:38123200-38128600 Weak transcription Fetal Intestine Large intestine
37 chr6:38123200-38132600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr6:38123200-38136800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr6:38123200-38153200 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr6:38123400-38128000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr6:38123400-38128600 Weak transcription Pancreas Pancrea
42 chr6:38123400-38128800 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr6:38123400-38131000 Weak transcription Left Ventricle heart
44 chr6:38123400-38131600 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr6:38123400-38155400 Weak transcription Aorta Aorta
46 chr6:38123400-38157000 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr6:38123400-38176800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr6:38123600-38128800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr6:38123600-38129000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr6:38123600-38129200 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015