The 2.0 version of rSNPBase

Variant report

Variant rs12662543
Chromosome Location chr6:38110010-38110011
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38075200-38118200 Weak transcription Colonic Mucosa Colon
2 chr6:38078800-38111000 Weak transcription Fetal Kidney kidney
3 chr6:38078800-38111000 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr6:38079600-38113800 Weak transcription Placenta Amnion Placenta Amnion
5 chr6:38081800-38121800 Weak transcription Psoas Muscle Psoas
6 chr6:38084000-38122200 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr6:38084600-38124200 Weak transcription Hela-S3 cervix
8 chr6:38087600-38118800 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr6:38090000-38111000 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr6:38091200-38119800 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr6:38091400-38110200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr6:38091400-38110400 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr6:38091400-38116000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr6:38091400-38141800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr6:38092800-38112200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr6:38092800-38117000 Weak transcription Spleen Spleen
17 chr6:38095200-38122600 Weak transcription A549 lung
18 chr6:38096000-38116000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr6:38099600-38117800 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr6:38099800-38111000 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr6:38099800-38119600 Weak transcription Aorta Aorta
22 chr6:38100000-38112800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr6:38100200-38111000 Weak transcription HSMMtube muscle
24 chr6:38100200-38111200 Weak transcription HMEC breast
25 chr6:38100400-38110800 Weak transcription Muscle Satellite Cultured Cells --
26 chr6:38100400-38113600 Weak transcription NHLF lung
27 chr6:38100600-38110600 Weak transcription HSMM muscle
28 chr6:38100600-38114000 Weak transcription NH-A brain
29 chr6:38101200-38113800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr6:38102800-38110200 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr6:38103000-38110400 Weak transcription Osteobl bone
32 chr6:38103000-38110800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr6:38103000-38111000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr6:38103000-38127200 Weak transcription Colon Smooth Muscle Colon
35 chr6:38103200-38111000 Weak transcription Adipose Nuclei Adipose
36 chr6:38103200-38112800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr6:38104000-38118400 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr6:38104400-38111600 Weak transcription Stomach Smooth Muscle stomach
39 chr6:38104600-38111000 Weak transcription Left Ventricle heart
40 chr6:38104600-38112000 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr6:38104600-38112200 Weak transcription Pancreas Pancrea
42 chr6:38104600-38112800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr6:38104600-38113800 Weak transcription Esophagus oesophagus
44 chr6:38104600-38119600 Weak transcription Gastric stomach
45 chr6:38104600-38119600 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr6:38104800-38113600 Weak transcription NHDF-Ad bronchial
47 chr6:38105600-38110800 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr6:38105600-38112200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr6:38105600-38116200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr6:38105800-38111800 Strong transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015