Variant report

Variant	rs73417963
Chromosome Location	chr6:37981179-37981180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37974723..37976308-chr6:37979935..37981504,2	MCF-7	breast:

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10947710	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10947717	1.00[ASN][1000 genomes]
rs11544072	1.00[ASN][1000 genomes]
rs11750950	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751094	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751706	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751937	1.00[ASN][1000 genomes]
rs11752567	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752623	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752650	1.00[ASN][1000 genomes]
rs11752692	1.00[ASN][1000 genomes]
rs11752863	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753054	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11753118	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753267	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753391	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753408	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753437	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753563	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753759	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754248	1.00[ASN][1000 genomes]
rs11754590	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754816	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11754980	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755439	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11755559	1.00[ASN][1000 genomes]
rs11755600	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755721	1.00[ASN][1000 genomes]
rs11755894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756030	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756626	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757072	0.86[EUR][1000 genomes]
rs11757143	0.82[EUR][1000 genomes]
rs11757323	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11757359	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757654	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757980	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758035	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758095	0.80[EUR][1000 genomes]
rs11758540	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759483	0.80[EUR][1000 genomes]
rs11759486	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759574	1.00[ASN][1000 genomes]
rs11759721	1.00[ASN][1000 genomes]
rs11759725	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759816	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760121	1.00[ASN][1000 genomes]
rs12202872	1.00[ASN][1000 genomes]
rs12661480	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662543	0.80[EUR][1000 genomes]
rs12662940	0.80[EUR][1000 genomes]
rs12664900	0.86[EUR][1000 genomes]
rs1923280	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28740822	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34370874	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35142414	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248010	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4336442	1.00[ASN][1000 genomes]
rs55707043	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55731063	1.00[ASN][1000 genomes]
rs55743233	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55786703	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786741	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825770	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836194	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837436	1.00[ASN][1000 genomes]
rs55878533	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55902626	1.00[ASN][1000 genomes]
rs55972258	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55990078	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56021282	1.00[ASN][1000 genomes]
rs56030069	1.00[ASN][1000 genomes]
rs56073681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56106114	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159928	1.00[ASN][1000 genomes]
rs56178553	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56206533	1.00[ASN][1000 genomes]
rs56229452	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308246	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341927	1.00[ASN][1000 genomes]
rs56348433	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56366053	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56390138	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56413211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56914148	0.86[EUR][1000 genomes]
rs57040650	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57142729	0.86[EUR][1000 genomes]
rs57160603	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57180729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57269218	1.00[ASN][1000 genomes]
rs57564251	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57591988	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57995712	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58003999	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58332635	0.86[EUR][1000 genomes]
rs58418493	1.00[ASN][1000 genomes]
rs59450336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59578279	0.86[EUR][1000 genomes]
rs59693994	1.00[ASN][1000 genomes]
rs59769374	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59996041	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60109083	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417491	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417502	1.00[ASN][1000 genomes]
rs73417971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419414	1.00[ASN][1000 genomes]
rs73419417	1.00[ASN][1000 genomes]
rs73419418	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419422	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419436	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419447	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419451	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419457	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419461	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419465	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419475	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419487	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419907	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419916	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419919	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419927	0.86[EUR][1000 genomes]
rs73419930	0.82[EUR][1000 genomes]
rs73419938	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419941	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419944	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419945	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419946	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419947	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419949	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419955	0.86[EUR][1000 genomes]
rs73419959	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419960	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419963	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419971	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73419996	0.83[EUR][1000 genomes]
rs73421427	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421433	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421436	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421439	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421810	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421817	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421819	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421822	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421825	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421831	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421842	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421855	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421866	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421874	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421889	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421902	1.00[ASN][1000 genomes]
rs73423525	1.00[ASN][1000 genomes]
rs752110	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9369034	1.00[ASN][1000 genomes]
rs9462403	1.00[ASN][1000 genomes]
rs9470765	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470772	0.82[EUR][1000 genomes]
rs9470779	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv34450	chr6:37963308-38007241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37960800-37982400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:37963000-37984800	Weak transcription	Right Atrium	heart
3	chr6:37963000-37995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37965600-37982200	Weak transcription	Psoas Muscle	Psoas
5	chr6:37969200-37987800	Weak transcription	Fetal Kidney	kidney
6	chr6:37970800-37984200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:37972400-37983800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:37974800-37984600	Weak transcription	Placenta	Placenta
9	chr6:37976600-37983000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:37976600-37988400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:37976800-37983200	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:37976800-37987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:37977400-37982600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:37978200-37987600	Weak transcription	Pancreas	Pancrea
15	chr6:37978600-37983000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:37979200-37984400	Weak transcription	Primary B cells from cord blood	blood
17	chr6:37979400-37989000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:37980000-37986800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:37980600-37987800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:37981000-37981400	Enhancers	Pancreatic Islets	Pancreatic Islet

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