Variant report

Variant	rs4336442
Chromosome Location	chr6:38146446-38146447
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38144847..38147788-chr6:38455910..38458463,2	MCF-7	breast:
2	chr6:38143259..38145952-chr6:38146356..38150615,4	K562	blood:
3	chr6:38137479..38141029-chr6:38144999..38147856,3	K562	blood:
4	chr6:38137479..38141029-chr6:38143334..38147856,5	K562	blood:

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10456461	1.00[CHB][hapmap]
rs10456462	1.00[CHB][hapmap]
rs10947710	0.85[CEU][hapmap]
rs10947715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10947717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947719	1.00[ASN][1000 genomes]
rs11544072	1.00[ASN][1000 genomes]
rs11750950	0.86[CEU][hapmap]
rs11751094	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11751153	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11751630	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751937	1.00[ASN][1000 genomes]
rs11752623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11753054	0.86[CEU][hapmap]
rs11753122	1.00[ASN][1000 genomes]
rs11753388	1.00[ASN][1000 genomes]
rs11753391	1.00[ASN][1000 genomes]
rs11753408	1.00[ASN][1000 genomes]
rs11753437	1.00[ASN][1000 genomes]
rs11753563	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11753759	1.00[ASN][1000 genomes]
rs11754816	1.00[ASN][1000 genomes]
rs11754980	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11755439	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11755600	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11755721	1.00[ASN][1000 genomes]
rs11755894	1.00[ASN][1000 genomes]
rs11756301	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11756626	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11756902	0.86[CEU][hapmap]
rs11757072	0.91[CEU][hapmap]
rs11757654	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11757980	1.00[ASN][1000 genomes]
rs11758095	0.86[CEU][hapmap]
rs11758540	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11759205	1.00[ASN][1000 genomes]
rs11759483	0.85[CEU][hapmap]
rs11759816	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11760121	1.00[ASN][1000 genomes]
rs12202202	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12202872	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661480	0.85[CEU][hapmap]
rs12664900	0.85[CEU][hapmap]
rs17757975	1.00[CHB][hapmap]
rs1923280	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1931760	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1931761	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2395692	0.86[CEU][hapmap]
rs2395693	0.86[CEU][hapmap]
rs35142414	1.00[ASN][1000 genomes]
rs3800364	0.85[CEU][hapmap]
rs55707043	1.00[ASN][1000 genomes]
rs55731063	1.00[ASN][1000 genomes]
rs55743233	1.00[ASN][1000 genomes]
rs55786741	1.00[ASN][1000 genomes]
rs55825770	1.00[ASN][1000 genomes]
rs55836194	1.00[ASN][1000 genomes]
rs55878533	1.00[ASN][1000 genomes]
rs55902626	1.00[ASN][1000 genomes]
rs55972258	1.00[ASN][1000 genomes]
rs55990078	1.00[ASN][1000 genomes]
rs56020526	1.00[ASN][1000 genomes]
rs56021282	1.00[ASN][1000 genomes]
rs56030069	1.00[ASN][1000 genomes]
rs56178553	1.00[ASN][1000 genomes]
rs56206533	1.00[ASN][1000 genomes]
rs56229452	1.00[ASN][1000 genomes]
rs56308246	1.00[ASN][1000 genomes]
rs56341927	1.00[ASN][1000 genomes]
rs56366053	1.00[ASN][1000 genomes]
rs56413211	1.00[ASN][1000 genomes]
rs57180729	1.00[ASN][1000 genomes]
rs57564251	1.00[ASN][1000 genomes]
rs58003999	1.00[ASN][1000 genomes]
rs58418493	1.00[ASN][1000 genomes]
rs59450336	1.00[ASN][1000 genomes]
rs59693994	1.00[ASN][1000 genomes]
rs60109083	1.00[ASN][1000 genomes]
rs72849820	1.00[ASN][1000 genomes]
rs72851423	1.00[ASN][1000 genomes]
rs72851457	1.00[ASN][1000 genomes]
rs73417963	1.00[ASN][1000 genomes]
rs73417971	1.00[ASN][1000 genomes]
rs73417972	1.00[ASN][1000 genomes]
rs73417996	1.00[ASN][1000 genomes]
rs73417997	1.00[ASN][1000 genomes]
rs73419907	1.00[ASN][1000 genomes]
rs73419916	1.00[ASN][1000 genomes]
rs73419919	1.00[ASN][1000 genomes]
rs73419938	1.00[ASN][1000 genomes]
rs73419941	1.00[ASN][1000 genomes]
rs73419944	1.00[ASN][1000 genomes]
rs73419945	1.00[ASN][1000 genomes]
rs73419946	1.00[ASN][1000 genomes]
rs73419947	1.00[ASN][1000 genomes]
rs73419949	1.00[ASN][1000 genomes]
rs73419959	1.00[ASN][1000 genomes]
rs73419960	1.00[ASN][1000 genomes]
rs73419963	1.00[ASN][1000 genomes]
rs73419971	1.00[ASN][1000 genomes]
rs73421455	1.00[ASN][1000 genomes]
rs73421464	1.00[ASN][1000 genomes]
rs73421467	1.00[ASN][1000 genomes]
rs73421473	1.00[ASN][1000 genomes]
rs73421477	1.00[ASN][1000 genomes]
rs73421479	1.00[ASN][1000 genomes]
rs73421483	1.00[ASN][1000 genomes]
rs73421810	1.00[ASN][1000 genomes]
rs73421817	1.00[ASN][1000 genomes]
rs73421819	1.00[ASN][1000 genomes]
rs73421822	1.00[ASN][1000 genomes]
rs73421825	1.00[ASN][1000 genomes]
rs73421831	1.00[ASN][1000 genomes]
rs73421842	1.00[ASN][1000 genomes]
rs73421855	1.00[ASN][1000 genomes]
rs73421866	1.00[ASN][1000 genomes]
rs73421874	1.00[ASN][1000 genomes]
rs73421889	1.00[ASN][1000 genomes]
rs73421902	1.00[ASN][1000 genomes]
rs73423525	1.00[ASN][1000 genomes]
rs752110	0.85[CEU][hapmap]
rs7748392	0.86[CEU][hapmap]
rs876818	0.85[CEU][hapmap]
rs9369034	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462403	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470765	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9470772	0.86[CEU][hapmap]
rs9470777	0.86[CEU][hapmap]
rs9470779	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9470784	0.86[CEU][hapmap]
rs9470794	0.85[CEU][hapmap]
rs9470798	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv524213	chr6:38106844-38160627	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv517973	chr6:38131442-38152460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
9	nsv522522	chr6:38131442-38207636	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv520567	chr6:38144269-38152460	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38121000-38159600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38121800-38153600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:38123200-38153200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:38123400-38155400	Weak transcription	Aorta	Aorta
5	chr6:38123400-38157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:38123400-38176800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:38123600-38153000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:38123800-38151200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:38124000-38152200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:38124200-38151800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:38131800-38167800	Weak transcription	Right Atrium	heart
12	chr6:38133600-38160400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:38133600-38164000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:38136000-38159800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:38136800-38156000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:38138200-38147200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:38138400-38147200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:38138400-38147200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:38138600-38169400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:38138800-38147200	Weak transcription	Brain Germinal Matrix	brain
21	chr6:38138800-38147200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:38140000-38147200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:38141200-38152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:38141600-38166200	Weak transcription	Left Ventricle	heart
25	chr6:38141800-38168000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:38142000-38150200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:38142200-38155400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:38142400-38153000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:38142800-38147200	Weak transcription	Brain Substantia Nigra	brain
30	chr6:38142800-38162000	Weak transcription	Adipose Nuclei	Adipose
31	chr6:38143200-38146600	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:38143200-38159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:38143200-38161200	Weak transcription	Placenta	Placenta
34	chr6:38143600-38162400	Weak transcription	Right Ventricle	heart
35	chr6:38143600-38177200	Weak transcription	Ovary	ovary
36	chr6:38143800-38149800	Weak transcription	Primary T cells from cord blood	blood
37	chr6:38144000-38151600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:38144000-38159200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:38144000-38161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:38144000-38161400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:38144000-38161600	Weak transcription	Thymus	Thymus
42	chr6:38144200-38155600	Weak transcription	Spleen	Spleen
43	chr6:38144600-38151800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:38145000-38151800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:38145200-38148200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:38145200-38155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:38145200-38156400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:38145200-38163400	Weak transcription	Colonic Mucosa	Colon
49	chr6:38145600-38146600	Enhancers	Esophagus	oesophagus
50	chr6:38145600-38155000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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