Variant report

Variant	rs72849820
Chromosome Location	chr6:38185569-38185570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38185221..38187351-chr6:38192774..38196279,3	K562	blood:
2	chr6:38178185..38180709-chr6:38183811..38185746,2	K562	blood:
3	chr6:38184010..38186134-chr6:38187890..38189397,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10947717	1.00[ASN][1000 genomes]
rs10947719	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11544072	1.00[ASN][1000 genomes]
rs11751094	1.00[ASN][1000 genomes]
rs11751937	1.00[ASN][1000 genomes]
rs11753388	1.00[ASN][1000 genomes]
rs11753391	1.00[ASN][1000 genomes]
rs11753408	1.00[ASN][1000 genomes]
rs11753437	1.00[ASN][1000 genomes]
rs11753563	1.00[ASN][1000 genomes]
rs11753759	1.00[ASN][1000 genomes]
rs11754816	1.00[ASN][1000 genomes]
rs11755439	1.00[ASN][1000 genomes]
rs11755600	1.00[ASN][1000 genomes]
rs11755721	1.00[ASN][1000 genomes]
rs11755894	1.00[ASN][1000 genomes]
rs11756626	1.00[ASN][1000 genomes]
rs11757654	1.00[ASN][1000 genomes]
rs11757980	1.00[ASN][1000 genomes]
rs11759205	1.00[ASN][1000 genomes]
rs11759816	1.00[ASN][1000 genomes]
rs11760121	1.00[ASN][1000 genomes]
rs11967006	0.86[EUR][1000 genomes]
rs12202202	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202872	1.00[ASN][1000 genomes]
rs12215376	0.96[EUR][1000 genomes]
rs17757975	0.96[EUR][1000 genomes]
rs1923280	1.00[ASN][1000 genomes]
rs1931760	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931761	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35142414	1.00[ASN][1000 genomes]
rs4336442	1.00[ASN][1000 genomes]
rs55707043	1.00[ASN][1000 genomes]
rs55731063	1.00[ASN][1000 genomes]
rs55743233	1.00[ASN][1000 genomes]
rs55786741	1.00[ASN][1000 genomes]
rs55825770	1.00[ASN][1000 genomes]
rs55836194	1.00[ASN][1000 genomes]
rs55878533	1.00[ASN][1000 genomes]
rs55902626	1.00[ASN][1000 genomes]
rs55972258	1.00[ASN][1000 genomes]
rs55990078	1.00[ASN][1000 genomes]
rs56020526	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56021282	1.00[ASN][1000 genomes]
rs56030069	1.00[ASN][1000 genomes]
rs56064162	0.96[EUR][1000 genomes]
rs56178553	1.00[ASN][1000 genomes]
rs56206533	1.00[ASN][1000 genomes]
rs56229452	1.00[ASN][1000 genomes]
rs56308246	1.00[ASN][1000 genomes]
rs56341927	1.00[ASN][1000 genomes]
rs56413211	1.00[ASN][1000 genomes]
rs57564251	1.00[ASN][1000 genomes]
rs58003999	1.00[ASN][1000 genomes]
rs58418493	1.00[ASN][1000 genomes]
rs59693994	1.00[ASN][1000 genomes]
rs60109083	1.00[ASN][1000 genomes]
rs72849815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849852	0.96[EUR][1000 genomes]
rs72851423	1.00[ASN][1000 genomes]
rs72851457	1.00[ASN][1000 genomes]
rs73417996	1.00[ASN][1000 genomes]
rs73417997	1.00[ASN][1000 genomes]
rs73419907	1.00[ASN][1000 genomes]
rs73419916	1.00[ASN][1000 genomes]
rs73419919	1.00[ASN][1000 genomes]
rs73419938	1.00[ASN][1000 genomes]
rs73419941	1.00[ASN][1000 genomes]
rs73419944	1.00[ASN][1000 genomes]
rs73419945	1.00[ASN][1000 genomes]
rs73419946	1.00[ASN][1000 genomes]
rs73419947	1.00[ASN][1000 genomes]
rs73419949	1.00[ASN][1000 genomes]
rs73419959	1.00[ASN][1000 genomes]
rs73419960	1.00[ASN][1000 genomes]
rs73419963	1.00[ASN][1000 genomes]
rs73419971	1.00[ASN][1000 genomes]
rs73421810	1.00[ASN][1000 genomes]
rs73421817	1.00[ASN][1000 genomes]
rs73421819	1.00[ASN][1000 genomes]
rs73421822	1.00[ASN][1000 genomes]
rs73421825	1.00[ASN][1000 genomes]
rs73421831	1.00[ASN][1000 genomes]
rs73421842	1.00[ASN][1000 genomes]
rs73421855	1.00[ASN][1000 genomes]
rs73421866	1.00[ASN][1000 genomes]
rs73421874	1.00[ASN][1000 genomes]
rs73421889	1.00[ASN][1000 genomes]
rs73421902	1.00[ASN][1000 genomes]
rs73423525	1.00[ASN][1000 genomes]
rs9369034	1.00[ASN][1000 genomes]
rs9462403	1.00[ASN][1000 genomes]
rs9470765	1.00[ASN][1000 genomes]
rs9470779	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv522522	chr6:38131442-38207636	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv885819	chr6:38148770-38190439	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv520053	chr6:38154941-38207636	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38160800-38201400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:38166800-38194800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38167000-38210400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:38177600-38189200	Weak transcription	Gastric	stomach
5	chr6:38178000-38221600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:38178000-38221800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:38178400-38186200	Weak transcription	Aorta	Aorta
8	chr6:38178800-38187800	Weak transcription	Pancreas	Pancrea
9	chr6:38179800-38187800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:38180800-38187800	Weak transcription	Esophagus	oesophagus
11	chr6:38181000-38207600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:38181400-38189000	Weak transcription	Brain Germinal Matrix	brain
13	chr6:38181400-38191200	Weak transcription	Ovary	ovary
14	chr6:38181400-38195200	Weak transcription	Colonic Mucosa	Colon
15	chr6:38181400-38202600	Weak transcription	Fetal Stomach	stomach
16	chr6:38181400-38229400	Weak transcription	Fetal Intestine Small	intestine
17	chr6:38181600-38187800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:38182200-38194000	Weak transcription	Lung	lung
19	chr6:38182400-38186400	Weak transcription	Right Atrium	heart
20	chr6:38182400-38187400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:38182400-38187400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:38183200-38195200	Weak transcription	Fetal Brain Male	brain
23	chr6:38183400-38187200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:38183400-38187400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:38183400-38187400	Weak transcription	Brain Angular Gyrus	brain
26	chr6:38183400-38187800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:38183400-38188600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:38183600-38187400	Weak transcription	Brain Anterior Caudate	brain
29	chr6:38183600-38194000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:38184000-38187400	Weak transcription	Brain Substantia Nigra	brain
31	chr6:38184200-38197200	Weak transcription	HSMMtube	muscle
32	chr6:38184200-38202800	Weak transcription	Psoas Muscle	Psoas
33	chr6:38184400-38187400	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:38184600-38187400	Weak transcription	Brain Inferior Temporal Lobe	brain

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