The 2.0 version of rSNPBase

Variant report

Variant rs58003999
Chromosome Location chr6:38107311-38107312
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38057200-38109200 Weak transcription K562 blood
2 chr6:38060000-38108200 Weak transcription Ovary ovary
3 chr6:38072200-38108400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr6:38075200-38118200 Weak transcription Colonic Mucosa Colon
5 chr6:38078800-38109000 Weak transcription Rectal Smooth Muscle rectum
6 chr6:38078800-38111000 Weak transcription Fetal Kidney kidney
7 chr6:38078800-38111000 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr6:38079600-38113800 Weak transcription Placenta Amnion Placenta Amnion
9 chr6:38081800-38121800 Weak transcription Psoas Muscle Psoas
10 chr6:38084000-38122200 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr6:38084600-38124200 Weak transcription Hela-S3 cervix
12 chr6:38087600-38118800 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr6:38090000-38111000 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr6:38091200-38119800 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr6:38091400-38109400 Weak transcription Primary T cells fromperipheralblood blood
16 chr6:38091400-38110200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr6:38091400-38110400 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr6:38091400-38116000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr6:38091400-38141800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr6:38091800-38109600 Weak transcription Fetal Muscle Trunk muscle
21 chr6:38092600-38109000 Weak transcription Lung lung
22 chr6:38092800-38112200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr6:38092800-38117000 Weak transcription Spleen Spleen
24 chr6:38095200-38108000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr6:38095200-38122600 Weak transcription A549 lung
26 chr6:38095800-38109000 Weak transcription Liver Liver
27 chr6:38096000-38116000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr6:38099600-38117800 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr6:38099800-38111000 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr6:38099800-38119600 Weak transcription Aorta Aorta
31 chr6:38100000-38112800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr6:38100200-38111000 Weak transcription HSMMtube muscle
33 chr6:38100200-38111200 Weak transcription HMEC breast
34 chr6:38100400-38110800 Weak transcription Muscle Satellite Cultured Cells --
35 chr6:38100400-38113600 Weak transcription NHLF lung
36 chr6:38100600-38110600 Weak transcription HSMM muscle
37 chr6:38100600-38114000 Weak transcription NH-A brain
38 chr6:38101200-38113800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr6:38102400-38107800 Strong transcription Fetal Stomach stomach
40 chr6:38102800-38107800 Weak transcription HepG2 liver
41 chr6:38102800-38108800 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr6:38102800-38109600 Weak transcription Right Atrium heart
43 chr6:38102800-38110200 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr6:38103000-38110000 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr6:38103000-38110400 Weak transcription Osteobl bone
46 chr6:38103000-38110800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr6:38103000-38111000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr6:38103000-38127200 Weak transcription Colon Smooth Muscle Colon
49 chr6:38103200-38111000 Weak transcription Adipose Nuclei Adipose
50 chr6:38103200-38112800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015