Variant report

Variant	rs11757323
Chromosome Location	chr6:37996089-37996090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 188 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10498739	0.89[ASN][1000 genomes]
rs10498740	0.89[ASN][1000 genomes]
rs10947710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11544072	0.80[EUR][1000 genomes]
rs11750950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11751094	0.83[EUR][1000 genomes]
rs11751706	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11751937	0.80[EUR][1000 genomes]
rs11752623	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11752863	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11753054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753122	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11753267	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753388	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753391	0.83[EUR][1000 genomes]
rs11753408	0.83[EUR][1000 genomes]
rs11753437	0.83[EUR][1000 genomes]
rs11753563	0.83[EUR][1000 genomes]
rs11753759	0.83[EUR][1000 genomes]
rs11754980	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755600	0.83[EUR][1000 genomes]
rs11755894	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11756030	0.88[EUR][1000 genomes]
rs11756626	0.88[EUR][1000 genomes]
rs11756902	0.80[EUR][1000 genomes]
rs11757072	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11757143	0.85[EUR][1000 genomes]
rs11757654	0.83[EUR][1000 genomes]
rs11757980	0.83[EUR][1000 genomes]
rs11758095	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11758540	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11759205	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759483	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11759725	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759816	0.83[EUR][1000 genomes]
rs12660221	0.83[ASN][1000 genomes]
rs12660498	0.94[ASN][1000 genomes]
rs12660732	0.83[ASN][1000 genomes]
rs12660773	0.99[ASN][1000 genomes]
rs12660922	0.89[ASN][1000 genomes]
rs12661073	0.83[ASN][1000 genomes]
rs12661109	0.99[ASN][1000 genomes]
rs12661480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662305	0.89[ASN][1000 genomes]
rs12662543	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12662823	0.99[ASN][1000 genomes]
rs12662940	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12663086	0.98[ASN][1000 genomes]
rs12663427	0.82[ASN][1000 genomes]
rs12663957	0.99[ASN][1000 genomes]
rs12664900	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16890215	0.81[ASN][1000 genomes]
rs16890247	0.88[ASN][1000 genomes]
rs16890298	0.94[ASN][1000 genomes]
rs16890299	0.94[ASN][1000 genomes]
rs16890305	0.96[ASN][1000 genomes]
rs16890307	0.94[ASN][1000 genomes]
rs16890309	0.96[ASN][1000 genomes]
rs16890341	0.83[ASN][1000 genomes]
rs1923280	0.83[EUR][1000 genomes]
rs2055207	0.83[ASN][1000 genomes]
rs2055208	0.82[ASN][1000 genomes]
rs2145887	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2645125	0.80[ASN][1000 genomes]
rs2842521	0.80[ASN][1000 genomes]
rs28740822	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34370874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35142414	0.96[EUR][1000 genomes]
rs35248010	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3800364	0.80[EUR][1000 genomes]
rs3852216	0.88[ASN][1000 genomes]
rs55707043	0.88[EUR][1000 genomes]
rs55731063	0.80[EUR][1000 genomes]
rs55743233	0.88[EUR][1000 genomes]
rs55786703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55786741	0.86[EUR][1000 genomes]
rs55825770	0.88[EUR][1000 genomes]
rs55836194	0.88[EUR][1000 genomes]
rs55878533	0.88[EUR][1000 genomes]
rs55902626	0.80[EUR][1000 genomes]
rs55972258	0.83[EUR][1000 genomes]
rs55990078	0.88[EUR][1000 genomes]
rs56030069	0.80[EUR][1000 genomes]
rs56073681	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56106114	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56178553	0.83[EUR][1000 genomes]
rs56229452	0.88[EUR][1000 genomes]
rs56308246	0.88[EUR][1000 genomes]
rs56348433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366053	0.94[EUR][1000 genomes]
rs56390138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413211	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56688119	0.83[ASN][1000 genomes]
rs56914148	0.88[EUR][1000 genomes]
rs57040650	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57142729	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57160603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57180729	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57276677	0.87[ASN][1000 genomes]
rs57458792	0.94[ASN][1000 genomes]
rs57564251	0.83[EUR][1000 genomes]
rs57591988	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57630694	0.81[EUR][1000 genomes]
rs57911756	0.87[ASN][1000 genomes]
rs57995712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58003999	0.83[EUR][1000 genomes]
rs58084785	0.96[ASN][1000 genomes]
rs58320470	0.81[ASN][1000 genomes]
rs58332635	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58473303	0.99[ASN][1000 genomes]
rs59036086	0.88[ASN][1000 genomes]
rs59103990	0.89[ASN][1000 genomes]
rs59450336	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59578279	0.88[EUR][1000 genomes]
rs59693994	0.80[EUR][1000 genomes]
rs59769374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59859268	0.82[ASN][1000 genomes]
rs59996041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60109083	0.83[EUR][1000 genomes]
rs60404082	0.99[ASN][1000 genomes]
rs60425175	0.83[ASN][1000 genomes]
rs60508820	0.99[ASN][1000 genomes]
rs60883115	0.98[ASN][1000 genomes]
rs61090283	0.81[ASN][1000 genomes]
rs61108907	0.82[ASN][1000 genomes]
rs61172238	0.83[ASN][1000 genomes]
rs61277916	0.93[ASN][1000 genomes]
rs73417963	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73417971	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417972	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417996	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417997	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419907	0.90[EUR][1000 genomes]
rs73419916	0.88[EUR][1000 genomes]
rs73419919	0.88[EUR][1000 genomes]
rs73419927	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73419930	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73419938	0.88[EUR][1000 genomes]
rs73419941	0.88[EUR][1000 genomes]
rs73419944	0.88[EUR][1000 genomes]
rs73419945	0.88[EUR][1000 genomes]
rs73419946	0.88[EUR][1000 genomes]
rs73419947	0.85[EUR][1000 genomes]
rs73419949	0.88[EUR][1000 genomes]
rs73419955	0.88[EUR][1000 genomes]
rs73419959	0.88[EUR][1000 genomes]
rs73419960	0.88[EUR][1000 genomes]
rs73419963	0.88[EUR][1000 genomes]
rs73419996	0.86[EUR][1000 genomes]
rs73421427	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421433	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421436	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73421439	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73421444	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421455	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421464	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73421467	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421473	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421477	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421479	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421483	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421810	0.83[EUR][1000 genomes]
rs73421817	0.83[EUR][1000 genomes]
rs73421819	0.83[EUR][1000 genomes]
rs73421822	0.83[EUR][1000 genomes]
rs73421825	0.83[EUR][1000 genomes]
rs73421831	0.83[EUR][1000 genomes]
rs73421842	0.83[EUR][1000 genomes]
rs73421855	0.83[EUR][1000 genomes]
rs73421866	0.83[EUR][1000 genomes]
rs73421874	0.83[EUR][1000 genomes]
rs73421889	0.83[EUR][1000 genomes]
rs73423525	0.80[EUR][1000 genomes]
rs752110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739801	0.85[ASN][1000 genomes]
rs876818	0.80[EUR][1000 genomes]
rs9470765	0.85[EUR][1000 genomes]
rs9470772	0.85[EUR][1000 genomes]
rs9470796	0.80[EUR][1000 genomes]
rs9470798	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv34450	chr6:37963308-38007241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2763549	chr6:37985025-38014006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37985000-38002400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:37985000-38030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:37985200-38001400	Weak transcription	Small Intestine	intestine
4	chr6:37988000-38001400	Weak transcription	Stomach Mucosa	stomach
5	chr6:37990400-38000400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:37990600-38005800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:37992800-37998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:37993000-38001800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:37994000-37996600	Enhancers	Dnd41	blood
10	chr6:37994400-37999200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:37994400-38011400	Weak transcription	Aorta	Aorta
12	chr6:37994600-37996600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:37994600-37996800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:37995000-37996600	Enhancers	GM12878-XiMat	blood
15	chr6:37995000-37996800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:37995000-37997200	Enhancers	Liver	Liver
17	chr6:37995000-37998000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:37995200-37996200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:37995200-37996600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:37995200-37997000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:37995200-38000800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:37995400-37996200	Enhancers	HUVEC	blood vessel
23	chr6:37995400-37996400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:37995400-37996400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:37995400-37996600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:37995400-37996600	Enhancers	Left Ventricle	heart
27	chr6:37995400-37996600	Enhancers	NHDF-Ad	bronchial
28	chr6:37995400-37997200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:37995400-37997200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:37995400-37997200	Enhancers	Osteobl	bone
31	chr6:37995400-37997600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:37995400-37997800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:37995600-37996200	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:37995600-37996400	Enhancers	Primary T cells from cord blood	blood
35	chr6:37995600-37997000	Enhancers	Primary hematopoietic stem cells	blood
36	chr6:37995600-37997000	Enhancers	Adipose Nuclei	Adipose
37	chr6:37995600-37997000	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr6:37995600-37998200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:37995600-37998800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:37995600-38001200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:37995800-37996400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr6:37995800-37996600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:37995800-37996600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:37995800-37997200	Weak transcription	A549	lung
45	chr6:37995800-37998400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:37995800-37998600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:37995800-37998600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:37995800-37998600	Weak transcription	NHEK	skin
49	chr6:37995800-37999000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:37995800-38001200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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