Variant report

Variant	rs61277916
Chromosome Location	chr6:37956751-37956752
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37956692..37960891-chr6:37962737..37966006,6	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10498739	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10498740	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10947710	0.93[ASN][1000 genomes]
rs11750950	0.95[ASN][1000 genomes]
rs11752863	0.93[ASN][1000 genomes]
rs11753054	0.93[ASN][1000 genomes]
rs11757323	0.93[ASN][1000 genomes]
rs11759725	0.91[ASN][1000 genomes]
rs12660498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12660773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12660922	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12661109	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12661480	0.98[ASN][1000 genomes]
rs12662305	0.93[ASN][1000 genomes]
rs12662823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12663086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12663957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16890177	1.00[AMR][1000 genomes]
rs16890181	1.00[AMR][1000 genomes]
rs16890215	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16890247	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16890298	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16890299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16890301	0.83[ASN][1000 genomes]
rs16890305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16890307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16890309	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2064795	1.00[AMR][1000 genomes]
rs2274090	1.00[AMR][1000 genomes]
rs2645125	0.82[ASN][1000 genomes]
rs2842521	0.82[ASN][1000 genomes]
rs28740822	0.93[ASN][1000 genomes]
rs34370874	0.93[ASN][1000 genomes]
rs3852216	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55786703	0.96[ASN][1000 genomes]
rs56348433	0.93[ASN][1000 genomes]
rs56390138	0.93[ASN][1000 genomes]
rs57160603	0.93[ASN][1000 genomes]
rs57198506	1.00[AMR][1000 genomes]
rs57276677	0.91[ASN][1000 genomes]
rs57458792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57591988	0.94[ASN][1000 genomes]
rs57911756	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57995712	0.93[ASN][1000 genomes]
rs58084785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58320470	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58473303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58692659	1.00[AMR][1000 genomes]
rs59036086	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59103990	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59649654	1.00[AMR][1000 genomes]
rs59769374	0.93[ASN][1000 genomes]
rs59859268	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59996041	0.98[ASN][1000 genomes]
rs60284537	1.00[AMR][1000 genomes]
rs60404082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60508820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60637081	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60883115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61090283	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61108907	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61332486	1.00[AMR][1000 genomes]
rs61466900	1.00[AMR][1000 genomes]
rs71569402	0.80[ASN][1000 genomes]
rs73421436	0.93[ASN][1000 genomes]
rs73421439	0.93[ASN][1000 genomes]
rs752110	0.98[ASN][1000 genomes]
rs7739801	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:37942800-37956800	Weak transcription	Aorta	Aorta
4	chr6:37948000-37956800	Weak transcription	Pancreas	Pancrea
5	chr6:37948400-37957600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:37948400-37958600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:37948600-37957800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:37949800-37956800	Weak transcription	Right Atrium	heart
9	chr6:37949800-37962000	Weak transcription	Small Intestine	intestine
10	chr6:37950000-37963600	Weak transcription	Spleen	Spleen
11	chr6:37950400-37957000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:37950400-37958800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:37951800-37959800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:37952200-37961400	Enhancers	Liver	Liver
15	chr6:37952600-37957800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:37952600-37958600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:37953400-37957200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:37953400-37958600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:37953400-37960400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:37953400-37962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:37953400-37962600	Weak transcription	Lung	lung
22	chr6:37953400-37965200	Weak transcription	Esophagus	oesophagus
23	chr6:37953600-37957200	Enhancers	HepG2	liver
24	chr6:37953600-37958600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:37953800-37957600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:37954000-37956800	Enhancers	Osteobl	bone
27	chr6:37954000-37958000	Enhancers	Fetal Lung	lung
28	chr6:37954000-37958800	Enhancers	Brain Anterior Caudate	brain
29	chr6:37954000-37959600	Enhancers	HSMMtube	muscle
30	chr6:37954000-37960200	Enhancers	Colon Smooth Muscle	Colon
31	chr6:37954000-37960600	Enhancers	HSMM	muscle
32	chr6:37954200-37957200	Enhancers	NH-A	brain
33	chr6:37954200-37957400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:37954200-37963000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:37954400-37956800	Weak transcription	Psoas Muscle	Psoas
36	chr6:37954400-37957200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:37954400-37960200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr6:37954600-37957800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:37954600-37960200	Enhancers	NHLF	lung
40	chr6:37955000-37957600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:37955000-37957800	Weak transcription	NHEK	skin
42	chr6:37955000-37958000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:37955200-37956800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:37955400-37956800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:37955400-37956800	Enhancers	Primary B cells from peripheral blood	blood
46	chr6:37955400-37956800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:37955400-37956800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:37955400-37956800	Enhancers	Brain Hippocampus Middle	brain
49	chr6:37955400-37957000	Enhancers	Ovary	ovary
50	chr6:37955400-37957000	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links