Variant report

Variant	rs60637081
Chromosome Location	chr6:37848802-37848803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37848628..37851263-chr6:37853706..37855828,2	K562	blood:
2	chr6:37841197..37843157-chr6:37847837..37849901,2	K562	blood:
3	chr6:37841525..37843246-chr6:37846742..37850050,4	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10498739	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10498740	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11752863	0.86[ASN][1000 genomes]
rs12660498	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12660773	1.00[AMR][1000 genomes]
rs12660922	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12661109	1.00[AMR][1000 genomes]
rs12661480	0.82[ASN][1000 genomes]
rs12662305	0.86[ASN][1000 genomes]
rs12662823	1.00[AMR][1000 genomes]
rs12663086	1.00[AMR][1000 genomes]
rs12663957	1.00[AMR][1000 genomes]
rs16890177	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16890181	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16890215	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16890247	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16890298	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16890299	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16890305	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16890307	1.00[AMR][1000 genomes]
rs16890309	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2064795	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2274090	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3852216	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55786703	0.80[ASN][1000 genomes]
rs57198506	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57276677	0.89[ASN][1000 genomes]
rs57458792	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57591988	0.82[ASN][1000 genomes]
rs57911756	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58084785	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58320470	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58473303	1.00[AMR][1000 genomes]
rs58611435	0.80[ASN][1000 genomes]
rs58692659	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59036086	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59103990	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59649654	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59859268	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59996041	0.82[ASN][1000 genomes]
rs60141491	0.91[ASN][1000 genomes]
rs60284537	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60404082	1.00[AMR][1000 genomes]
rs60508820	1.00[AMR][1000 genomes]
rs60883115	1.00[AMR][1000 genomes]
rs61090283	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61108907	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61277916	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61332486	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61466900	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73421436	0.86[ASN][1000 genomes]
rs73421439	0.86[ASN][1000 genomes]
rs752110	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
2	chr6:37834000-37849200	Weak transcription	Fetal Thymus	thymus
3	chr6:37834800-37849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:37836400-37849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:37836400-37849000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:37836400-37849400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:37836400-37849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:37836400-37861800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:37836600-37849000	Weak transcription	Primary B cells from cord blood	blood
10	chr6:37837000-37849200	Weak transcription	HSMMtube	muscle
11	chr6:37837200-37856000	Weak transcription	NHEK	skin
12	chr6:37840200-37855400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:37840400-37850200	Weak transcription	HMEC	breast
14	chr6:37840400-37860000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:37840600-37861800	Weak transcription	Primary T cells from cord blood	blood
16	chr6:37840800-37849200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:37841200-37849000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:37841200-37852200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:37841400-37849000	Weak transcription	Placenta	Placenta
20	chr6:37841600-37862400	Weak transcription	Fetal Lung	lung
21	chr6:37841800-37850400	Weak transcription	Fetal Intestine Small	intestine
22	chr6:37842000-37849200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:37842800-37849200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:37842800-37849200	Weak transcription	HepG2	liver
25	chr6:37844800-37849200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:37845200-37849000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:37845200-37850000	Weak transcription	Stomach Mucosa	stomach
28	chr6:37845400-37851600	Weak transcription	Fetal Heart	heart
29	chr6:37845600-37849400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:37845800-37849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:37845800-37849800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:37846000-37849200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:37846000-37850200	Weak transcription	Fetal Stomach	stomach
34	chr6:37846000-37857000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:37846000-37865200	Weak transcription	Thymus	Thymus
36	chr6:37846200-37849000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:37846200-37849000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:37846200-37849200	Weak transcription	NH-A	brain
39	chr6:37846200-37850000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:37846400-37849000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:37846400-37849000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:37846400-37849000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:37846400-37849000	Weak transcription	Lung	lung
44	chr6:37846400-37849200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:37846400-37849400	Weak transcription	Osteobl	bone
46	chr6:37846400-37849800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:37846400-37849800	Weak transcription	Aorta	Aorta
48	chr6:37846400-37849800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:37846400-37849800	Weak transcription	HSMM	muscle
50	chr6:37846400-37850000	Weak transcription	Adipose Nuclei	Adipose

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