Variant report

Variant	rs11752863
Chromosome Location	chr6:37936506-37936507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37922083..37924500-chr6:37934489..37937047,2	K562	blood:

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs1041037	0.84[EUR][1000 genomes]
rs10498739	0.99[ASN][1000 genomes]
rs10498740	0.99[ASN][1000 genomes]
rs10947710	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11750950	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751094	1.00[CEU][hapmap]
rs11751153	1.00[CEU][hapmap]
rs11751706	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751781	0.85[ASN][1000 genomes]
rs11751927	0.83[ASN][1000 genomes]
rs11752521	0.82[ASN][1000 genomes]
rs11752567	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs11752623	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11752650	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11752692	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753054	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11753118	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11753122	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753267	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753388	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753563	1.00[CEU][hapmap]
rs11754247	0.85[EUR][1000 genomes]
rs11754248	0.83[EUR][1000 genomes]
rs11754590	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11754980	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11755439	1.00[CEU][hapmap]
rs11755559	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs11755600	1.00[CEU][hapmap]
rs11755894	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11756030	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11756626	1.00[CEU][hapmap]
rs11756713	0.82[ASN][1000 genomes]
rs11756902	1.00[CEU][hapmap]
rs11757072	1.00[CEU][hapmap]
rs11757323	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11757359	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757654	1.00[CEU][hapmap]
rs11758035	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11758095	1.00[CEU][hapmap]
rs11758540	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11759205	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11759475	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11759483	1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs11759486	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11759574	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11759721	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11759725	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11759816	1.00[CEU][hapmap]
rs11759826	0.84[ASN][1000 genomes]
rs11969988	0.82[ASN][1000 genomes]
rs12660498	0.94[ASN][1000 genomes]
rs12660773	0.89[ASN][1000 genomes]
rs12660919	0.82[ASN][1000 genomes]
rs12660922	0.99[ASN][1000 genomes]
rs12661109	0.89[ASN][1000 genomes]
rs12661480	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662305	0.98[ASN][1000 genomes]
rs12662823	0.89[ASN][1000 genomes]
rs12662940	0.81[AFR][1000 genomes]
rs12663086	0.89[ASN][1000 genomes]
rs12663957	0.89[ASN][1000 genomes]
rs12664091	0.82[ASN][1000 genomes]
rs12664900	1.00[CEU][hapmap];0.82[AFR][1000 genomes]
rs13206035	0.84[ASN][1000 genomes]
rs16890177	0.84[ASN][1000 genomes]
rs16890181	0.84[ASN][1000 genomes]
rs16890215	0.90[ASN][1000 genomes]
rs16890247	0.98[ASN][1000 genomes]
rs16890267	0.83[ASN][1000 genomes]
rs16890298	0.94[ASN][1000 genomes]
rs16890299	0.94[ASN][1000 genomes]
rs16890305	0.93[ASN][1000 genomes]
rs16890307	0.91[ASN][1000 genomes]
rs16890309	0.93[ASN][1000 genomes]
rs1923280	1.00[CEU][hapmap]
rs2064795	0.84[ASN][1000 genomes]
rs2145887	0.92[CEU][hapmap]
rs2273441	0.83[ASN][1000 genomes]
rs2274090	0.84[ASN][1000 genomes]
rs2395689	0.84[ASN][1000 genomes]
rs2395692	1.00[CEU][hapmap]
rs2395693	1.00[CEU][hapmap]
rs2645111	0.80[ASN][1000 genomes]
rs2645125	0.80[ASN][1000 genomes]
rs2645130	0.84[ASN][1000 genomes]
rs2842510	0.84[ASN][1000 genomes]
rs2842511	0.83[ASN][1000 genomes]
rs2842512	0.83[ASN][1000 genomes]
rs2842521	0.80[ASN][1000 genomes]
rs28740822	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34254045	0.82[ASN][1000 genomes]
rs34370874	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34450348	0.85[ASN][1000 genomes]
rs35051126	0.84[ASN][1000 genomes]
rs35142414	0.85[EUR][1000 genomes]
rs35248010	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35772972	0.84[ASN][1000 genomes]
rs3800364	1.00[CEU][hapmap]
rs3844314	0.82[ASN][1000 genomes]
rs3852216	0.98[ASN][1000 genomes]
rs55786703	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55811006	0.84[EUR][1000 genomes]
rs55837436	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56023538	0.85[ASN][1000 genomes]
rs56073681	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56106114	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56159928	0.88[EUR][1000 genomes]
rs56348433	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56366053	0.88[EUR][1000 genomes]
rs56390138	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56413211	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57040650	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57160603	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57180729	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57198506	0.84[ASN][1000 genomes]
rs57269218	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57276677	0.97[ASN][1000 genomes]
rs57458792	0.94[ASN][1000 genomes]
rs57591988	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57911756	0.97[ASN][1000 genomes]
rs57995712	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58084785	0.93[ASN][1000 genomes]
rs58320470	0.90[ASN][1000 genomes]
rs58473303	0.89[ASN][1000 genomes]
rs58692659	0.80[ASN][1000 genomes]
rs59036086	0.98[ASN][1000 genomes]
rs59103990	0.99[ASN][1000 genomes]
rs59450336	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59649654	0.83[ASN][1000 genomes]
rs59769374	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59859268	0.92[ASN][1000 genomes]
rs59996041	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60141491	0.84[ASN][1000 genomes]
rs60284537	0.84[ASN][1000 genomes]
rs60404082	0.89[ASN][1000 genomes]
rs60508820	0.89[ASN][1000 genomes]
rs60637081	0.86[ASN][1000 genomes]
rs60883115	0.88[ASN][1000 genomes]
rs61090283	0.90[ASN][1000 genomes]
rs61108907	0.92[ASN][1000 genomes]
rs61277916	0.93[ASN][1000 genomes]
rs61332486	0.80[ASN][1000 genomes]
rs61466900	0.84[ASN][1000 genomes]
rs6906289	0.82[ASN][1000 genomes]
rs6911716	0.82[ASN][1000 genomes]
rs73417491	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73417502	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73417963	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73417971	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73417972	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73417996	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73417997	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73419414	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73419417	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73419418	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73419422	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73419436	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73419447	0.90[EUR][1000 genomes]
rs73419451	0.90[EUR][1000 genomes]
rs73419457	0.90[EUR][1000 genomes]
rs73419461	0.90[EUR][1000 genomes]
rs73419465	0.90[EUR][1000 genomes]
rs73419475	0.90[EUR][1000 genomes]
rs73419487	0.90[EUR][1000 genomes]
rs73421427	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421433	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421439	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421444	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421455	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421464	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73421467	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421473	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421477	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421479	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421483	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs752110	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739801	0.82[ASN][1000 genomes]
rs7747996	0.82[ASN][1000 genomes]
rs7748312	0.83[ASN][1000 genomes]
rs7748392	1.00[CEU][hapmap]
rs7759792	0.85[ASN][1000 genomes]
rs7775794	0.84[ASN][1000 genomes]
rs876818	1.00[CEU][hapmap]
rs9470765	1.00[CEU][hapmap]
rs9470772	1.00[CEU][hapmap]
rs9470777	1.00[CEU][hapmap]
rs9470779	1.00[CEU][hapmap]
rs9470784	1.00[CEU][hapmap]
rs9470794	1.00[CEU][hapmap]
rs9470798	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922600-37939000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:37922800-37938600	Weak transcription	Fetal Lung	lung
3	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37923000-37939000	Weak transcription	Ovary	ovary
6	chr6:37923600-37938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
8	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:37924600-37941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:37925200-37938800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:37925400-37939400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:37926800-37955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:37927000-37937600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:37927000-37942400	Weak transcription	Psoas Muscle	Psoas
15	chr6:37927200-37942400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:37929400-37938200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:37929400-37938800	Weak transcription	Fetal Stomach	stomach
18	chr6:37929400-37939400	Weak transcription	Spleen	Spleen
19	chr6:37929400-37942000	Weak transcription	Esophagus	oesophagus
20	chr6:37929400-37947800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:37929400-37953200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:37930200-37941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:37930200-37942200	Weak transcription	HepG2	liver
24	chr6:37930400-37938200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:37930400-37939400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:37930600-37941800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:37930800-37939200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:37931000-37939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37931000-37939400	Weak transcription	Fetal Thymus	thymus
30	chr6:37932200-37936800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:37933800-37938400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:37933800-37938600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:37933800-37939000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:37934000-37939200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:37934200-37936600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:37934400-37939000	Weak transcription	Small Intestine	intestine
37	chr6:37934400-37939400	Weak transcription	HSMMtube	muscle
38	chr6:37934400-37940600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:37934400-37949800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:37934800-37947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:37935000-37942400	Weak transcription	HSMM	muscle
42	chr6:37935000-37942400	Weak transcription	NHDF-Ad	bronchial
43	chr6:37935000-37947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:37935200-37937600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:37935200-37939200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:37935200-37942400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:37935200-37942400	Weak transcription	A549	lung
48	chr6:37935200-37947000	Weak transcription	NHEK	skin
49	chr6:37936200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr6:37936200-37936600	Enhancers	Left Ventricle	heart

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