Variant report

Variant	rs11751153
Chromosome Location	chr6:38041113-38041114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10456461	1.00[CHB][hapmap]
rs10456462	1.00[CHB][hapmap]
rs10947710	1.00[CEU][hapmap]
rs10947715	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10947717	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11750950	1.00[CEU][hapmap]
rs11751094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11752567	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11752623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs11752863	1.00[CEU][hapmap]
rs11753054	1.00[CEU][hapmap]
rs11753118	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11753267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11753563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11754980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11755439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11755600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11756030	1.00[CEU][hapmap]
rs11756301	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11756626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11756902	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs11757072	1.00[CEU][hapmap]
rs11757359	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11757654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11758095	1.00[CEU][hapmap]
rs11758540	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11759483	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs11759486	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11759816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12202202	1.00[CHB][hapmap]
rs12661480	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs12664900	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs17757975	1.00[CHB][hapmap]
rs1923280	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1931760	1.00[CHB][hapmap]
rs1931761	1.00[CHB][hapmap]
rs2145887	0.92[CEU][hapmap]
rs2395692	1.00[CEU][hapmap]
rs2395693	1.00[CEU][hapmap]
rs3800364	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs4336442	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs752110	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs7748392	1.00[CEU][hapmap]
rs876818	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs9369034	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9462399	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9462403	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9470765	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9470772	1.00[CEU][hapmap]
rs9470777	1.00[CEU][hapmap]
rs9470779	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9470784	1.00[CEU][hapmap]
rs9470794	1.00[CEU][hapmap]
rs9470798	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	esv2103554	chr6:38041113-38041114	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38017200-38055000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:38020400-38046200	Weak transcription	Stomach Mucosa	stomach
3	chr6:38023000-38054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:38023200-38052800	Weak transcription	Gastric	stomach
5	chr6:38024600-38041800	Weak transcription	Fetal Brain Male	brain
6	chr6:38024600-38045000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:38026000-38047600	Weak transcription	Hela-S3	cervix
8	chr6:38026200-38053800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:38030800-38041600	Weak transcription	HMEC	breast
10	chr6:38030800-38085800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:38031400-38042400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:38031400-38045000	Weak transcription	Aorta	Aorta
13	chr6:38031400-38052400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:38031600-38048200	Weak transcription	HUVEC	blood vessel
15	chr6:38031600-38048600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:38031600-38049400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:38031600-38053200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:38031600-38059600	Weak transcription	Spleen	Spleen
19	chr6:38031600-38061600	Weak transcription	Brain Germinal Matrix	brain
20	chr6:38031800-38045400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:38032000-38052600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:38032000-38052600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:38032200-38042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:38032200-38044800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:38032200-38048200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:38032200-38048400	Weak transcription	HSMM	muscle
27	chr6:38032200-38048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:38032200-38051400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:38032400-38045200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:38032400-38045400	Weak transcription	A549	lung
31	chr6:38032400-38050800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:38032400-38056200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:38032800-38046400	Weak transcription	Osteobl	bone
34	chr6:38032800-38046600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:38032800-38046800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:38032800-38050000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:38032800-38050000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:38032800-38050000	Weak transcription	Dnd41	blood
39	chr6:38032800-38050000	Weak transcription	NHEK	skin
40	chr6:38033000-38051200	Weak transcription	Fetal Intestine Large	intestine
41	chr6:38033000-38052600	Weak transcription	Lung	lung
42	chr6:38033000-38063400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:38033200-38048400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:38033200-38050000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:38033200-38051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:38033400-38042400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:38033400-38048200	Weak transcription	NH-A	brain
48	chr6:38033600-38045400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr6:38033600-38050800	Weak transcription	Placenta	Placenta
50	chr6:38034000-38042400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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