Variant report

Variant	rs11759721
Chromosome Location	chr6:37799234-37799235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37797940..37799807-chr6:37808764..37811623,2	MCF-7	breast:
2	chr6:37797639..37800200-chr6:37805960..37807518,2	K562	blood:
3	chr6:37786464..37788426-chr6:37798641..37800200,2	K562	blood:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1041037	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750950	0.92[CEU][hapmap]
rs11751706	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752567	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752623	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11752650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752692	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752863	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753054	0.92[CEU][hapmap]
rs11753118	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753122	1.00[ASN][1000 genomes]
rs11753267	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753388	1.00[ASN][1000 genomes]
rs11754247	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11754248	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754590	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754980	0.92[CEU][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs11755559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755894	1.00[ASN][1000 genomes]
rs11756030	0.92[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757359	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758035	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758540	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759205	1.00[ASN][1000 genomes]
rs11759475	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759486	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759574	0.91[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661480	0.92[CEU][hapmap]
rs35142414	1.00[ASN][1000 genomes]
rs55811006	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837436	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073681	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56106114	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159928	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366053	1.00[ASN][1000 genomes]
rs56413211	1.00[ASN][1000 genomes]
rs57040650	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57180729	1.00[ASN][1000 genomes]
rs57269218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57591988	0.86[EUR][1000 genomes]
rs59450336	1.00[ASN][1000 genomes]
rs59996041	0.83[EUR][1000 genomes]
rs73417491	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417963	1.00[ASN][1000 genomes]
rs73417971	1.00[ASN][1000 genomes]
rs73417972	1.00[ASN][1000 genomes]
rs73417996	1.00[ASN][1000 genomes]
rs73417997	1.00[ASN][1000 genomes]
rs73419414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419418	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419422	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419436	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419447	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419451	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419457	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419461	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419465	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419475	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419487	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421427	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421433	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421436	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421439	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421444	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421455	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421464	1.00[ASN][1000 genomes]
rs73421467	1.00[ASN][1000 genomes]
rs73421473	1.00[ASN][1000 genomes]
rs73421477	1.00[ASN][1000 genomes]
rs73421479	1.00[ASN][1000 genomes]
rs73421483	1.00[ASN][1000 genomes]
rs752110	0.92[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37789400-37800000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:37791000-37800400	Weak transcription	Thymus	Thymus
3	chr6:37791200-37800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:37791400-37799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:37791400-37799400	Weak transcription	Aorta	Aorta
7	chr6:37791400-37800400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:37791400-37800400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:37791400-37801800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:37791400-37801800	Weak transcription	Fetal Brain Female	brain
11	chr6:37791400-37801800	Weak transcription	A549	lung
12	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:37791600-37800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:37791600-37801400	Weak transcription	Brain Germinal Matrix	brain
17	chr6:37792000-37800400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:37792400-37800400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:37792400-37801800	Weak transcription	Fetal Brain Male	brain
20	chr6:37793800-37801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:37793800-37813600	Weak transcription	NH-A	brain
22	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:37794400-37805200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:37794800-37800800	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:37795000-37813800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:37795200-37799800	Weak transcription	HepG2	liver
28	chr6:37795400-37799600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:37795800-37802200	Weak transcription	NHLF	lung
30	chr6:37795800-37813400	Weak transcription	HSMMtube	muscle
31	chr6:37796000-37800400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:37796000-37800400	Weak transcription	Fetal Stomach	stomach
33	chr6:37796000-37800600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:37796000-37812800	Weak transcription	Colonic Mucosa	Colon
35	chr6:37796000-37813200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:37796000-37813800	Weak transcription	NHDF-Ad	bronchial
37	chr6:37796000-37815600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
40	chr6:37796200-37800400	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:37796200-37801600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:37796200-37801600	Weak transcription	Fetal Lung	lung
43	chr6:37796200-37801800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:37796200-37801800	Weak transcription	Fetal Kidney	kidney
45	chr6:37796200-37802400	Weak transcription	Fetal Intestine Large	intestine
46	chr6:37796200-37811400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:37796200-37813200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:37796400-37800400	Weak transcription	Fetal Intestine Small	intestine
49	chr6:37796400-37800800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:37796400-37803400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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