Variant report

Variant	rs11755559
Chromosome Location	chr6:37775048-37775049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
2	chr6:37774211..37776209-chr6:37780376..37782205,2	MCF-7	breast:
3	chr6:37774109..37776209-chr6:37784418..37787142,2	K562	blood:
4	chr6:37773348..37778942-chr6:37784434..37789284,15	MCF-7	breast:
5	chr6:37771553..37779758-chr6:37784024..37789413,23	MCF-7	breast:
6	chr6:37761178..37763195-chr6:37774802..37776873,2	MCF-7	breast:
7	chr6:37773868..37777488-chr6:37778348..37782159,4	K562	blood:
8	chr6:37772786..37776209-chr6:37782926..37786197,4	K562	blood:
9	chr6:37774048..37775652-chr6:37787491..37789731,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1041037	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751706	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752623	1.00[ASN][1000 genomes]
rs11752650	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752863	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs11753118	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753122	1.00[ASN][1000 genomes]
rs11753267	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754247	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11754248	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754590	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754980	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs11756030	0.92[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758540	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11759475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11759486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759574	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759721	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661480	0.92[CEU][hapmap]
rs55811006	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837436	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073681	1.00[ASN][1000 genomes]
rs56106114	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159928	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366053	1.00[ASN][1000 genomes]
rs57040650	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57180729	1.00[ASN][1000 genomes]
rs57269218	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57591988	0.81[EUR][1000 genomes]
rs59450336	1.00[ASN][1000 genomes]
rs73417491	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417502	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417963	1.00[ASN][1000 genomes]
rs73417971	1.00[ASN][1000 genomes]
rs73417972	1.00[ASN][1000 genomes]
rs73419414	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419417	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419418	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419422	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419436	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419447	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419451	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419457	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419461	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419465	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419475	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419487	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421427	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421433	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421436	0.84[EUR][1000 genomes]
rs73421439	0.84[EUR][1000 genomes]
rs73421444	1.00[ASN][1000 genomes]
rs73421455	1.00[ASN][1000 genomes]
rs73421464	1.00[ASN][1000 genomes]
rs73421467	1.00[ASN][1000 genomes]
rs73421473	1.00[ASN][1000 genomes]
rs73421477	1.00[ASN][1000 genomes]
rs73421479	1.00[ASN][1000 genomes]
rs73421483	1.00[ASN][1000 genomes]
rs752110	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37769000-37775400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:37769600-37776800	Weak transcription	Liver	Liver
6	chr6:37772600-37775200	Weak transcription	HSMMtube	muscle
7	chr6:37772600-37776800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:37773000-37775200	Weak transcription	HMEC	breast
9	chr6:37773000-37775200	Weak transcription	NHEK	skin
10	chr6:37773000-37776800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:37773600-37775200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:37774200-37775400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:37774200-37775400	Weak transcription	Psoas Muscle	Psoas
14	chr6:37774600-37775600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:37774600-37777400	Enhancers	Fetal Brain Male	brain
16	chr6:37774800-37776400	Enhancers	Fetal Brain Female	brain
17	chr6:37775000-37775200	Weak transcription	Fetal Kidney	kidney
18	chr6:37775000-37775800	Enhancers	Brain Germinal Matrix	brain

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