Variant report

Variant	rs73419447
Chromosome Location	chr6:37856871-37856872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37854831..37859248-chr6:37860232..37864769,4	K562	blood:
2	chr6:37855752..37857873-chr6:37866014..37868220,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1041037	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750950	0.81[EUR][1000 genomes]
rs11751706	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752623	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752650	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752692	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752863	0.90[EUR][1000 genomes]
rs11753118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753122	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753267	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753388	1.00[ASN][1000 genomes]
rs11754247	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11754248	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754590	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754816	1.00[ASN][1000 genomes]
rs11754980	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755439	1.00[ASN][1000 genomes]
rs11755559	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755894	1.00[ASN][1000 genomes]
rs11756030	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757359	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758035	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758540	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759205	1.00[ASN][1000 genomes]
rs11759475	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11759486	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759574	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759721	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661480	0.81[EUR][1000 genomes]
rs35142414	1.00[ASN][1000 genomes]
rs55707043	1.00[ASN][1000 genomes]
rs55743233	1.00[ASN][1000 genomes]
rs55786703	0.81[EUR][1000 genomes]
rs55811006	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825770	1.00[ASN][1000 genomes]
rs55836194	1.00[ASN][1000 genomes]
rs55837436	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55878533	1.00[ASN][1000 genomes]
rs55990078	1.00[ASN][1000 genomes]
rs56073681	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56106114	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159928	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229452	1.00[ASN][1000 genomes]
rs56308246	1.00[ASN][1000 genomes]
rs56366053	1.00[ASN][1000 genomes]
rs56413211	1.00[ASN][1000 genomes]
rs57040650	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57180729	1.00[ASN][1000 genomes]
rs57269218	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57591988	0.87[EUR][1000 genomes]
rs59450336	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59996041	0.84[EUR][1000 genomes]
rs73417491	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417502	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417963	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73417971	1.00[ASN][1000 genomes]
rs73417972	1.00[ASN][1000 genomes]
rs73417996	1.00[ASN][1000 genomes]
rs73417997	1.00[ASN][1000 genomes]
rs73419414	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419417	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419418	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419422	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419436	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419451	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419461	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419475	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419907	1.00[ASN][1000 genomes]
rs73419916	1.00[ASN][1000 genomes]
rs73419919	1.00[ASN][1000 genomes]
rs73419938	1.00[ASN][1000 genomes]
rs73419941	1.00[ASN][1000 genomes]
rs73419944	1.00[ASN][1000 genomes]
rs73419945	1.00[ASN][1000 genomes]
rs73419946	1.00[ASN][1000 genomes]
rs73419947	1.00[ASN][1000 genomes]
rs73419949	1.00[ASN][1000 genomes]
rs73419959	1.00[ASN][1000 genomes]
rs73419960	1.00[ASN][1000 genomes]
rs73419963	1.00[ASN][1000 genomes]
rs73419971	1.00[ASN][1000 genomes]
rs73421427	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421433	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421436	0.90[EUR][1000 genomes]
rs73421439	0.90[EUR][1000 genomes]
rs73421444	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421455	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421464	1.00[ASN][1000 genomes]
rs73421467	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421473	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421477	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421479	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421483	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs752110	0.84[EUR][1000 genomes]
rs9470765	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37836400-37861800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:37840400-37860000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:37840600-37861800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:37841600-37862400	Weak transcription	Fetal Lung	lung
5	chr6:37846000-37857000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:37846000-37865200	Weak transcription	Thymus	Thymus
7	chr6:37846400-37857000	Weak transcription	Right Atrium	heart
8	chr6:37846400-37859600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:37846800-37857000	Weak transcription	Right Ventricle	heart
10	chr6:37849200-37857000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:37850000-37857000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:37850200-37857000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:37850200-37860600	Weak transcription	GM12878-XiMat	blood
14	chr6:37850200-37861600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:37850400-37861600	Weak transcription	Fetal Stomach	stomach
16	chr6:37850400-37861800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:37850600-37865800	Weak transcription	HSMMtube	muscle
18	chr6:37850600-37869200	Weak transcription	Lung	lung
19	chr6:37850600-37890400	Weak transcription	Primary B cells from cord blood	blood
20	chr6:37850800-37865200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:37851000-37861400	Weak transcription	Fetal Intestine Small	intestine
22	chr6:37851000-37861600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:37851000-37861800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:37851000-37861800	Weak transcription	Placenta	Placenta
25	chr6:37851000-37862200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:37851000-37866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:37851000-37868800	Weak transcription	Ovary	ovary
28	chr6:37851000-37869200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:37851000-37884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:37851200-37861400	Weak transcription	Fetal Intestine Large	intestine
31	chr6:37854600-37857000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:37854600-37857000	Weak transcription	Esophagus	oesophagus
33	chr6:37854800-37857000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:37854800-37860200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:37855200-37857600	Enhancers	HUVEC	blood vessel
36	chr6:37855600-37857000	Enhancers	HepG2	liver
37	chr6:37855600-37857600	Enhancers	Liver	Liver
38	chr6:37855600-37858800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:37855600-37865000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:37855800-37860800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:37856000-37857600	Enhancers	Colon Smooth Muscle	Colon
42	chr6:37856000-37871000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:37856200-37857200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:37856200-37857200	Weak transcription	Fetal Heart	heart
45	chr6:37856200-37857400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:37856200-37857600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr6:37856400-37857200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr6:37856400-37857400	Enhancers	NHDF-Ad	bronchial
49	chr6:37856400-37857600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:37856400-37857600	Enhancers	Muscle Satellite Cultured Cells	--

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