Variant report

Variant	rs55786703
Chromosome Location	chr6:37973035-37973036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs10498739	0.93[ASN][1000 genomes]
rs10498740	0.93[ASN][1000 genomes]
rs10947710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11750950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11751094	0.80[EUR][1000 genomes]
rs11751706	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11752567	0.81[EUR][1000 genomes]
rs11752623	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11752863	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11753054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11753118	0.81[EUR][1000 genomes]
rs11753122	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753267	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753388	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11753391	0.80[EUR][1000 genomes]
rs11753408	0.80[EUR][1000 genomes]
rs11753437	0.80[EUR][1000 genomes]
rs11753563	0.80[EUR][1000 genomes]
rs11753759	0.80[EUR][1000 genomes]
rs11754590	0.81[EUR][1000 genomes]
rs11754980	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755600	0.80[EUR][1000 genomes]
rs11755894	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11756030	0.91[EUR][1000 genomes]
rs11756626	0.86[EUR][1000 genomes]
rs11757072	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11757143	0.82[EUR][1000 genomes]
rs11757323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11757359	0.81[EUR][1000 genomes]
rs11757654	0.80[EUR][1000 genomes]
rs11757980	0.80[EUR][1000 genomes]
rs11758035	0.81[EUR][1000 genomes]
rs11758095	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11758540	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759205	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11759483	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11759486	0.81[EUR][1000 genomes]
rs11759725	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759816	0.80[EUR][1000 genomes]
rs12660221	0.80[ASN][1000 genomes]
rs12660498	0.98[ASN][1000 genomes]
rs12660732	0.80[ASN][1000 genomes]
rs12660773	0.96[ASN][1000 genomes]
rs12660922	0.93[ASN][1000 genomes]
rs12661073	0.80[ASN][1000 genomes]
rs12661109	0.96[ASN][1000 genomes]
rs12661480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12662305	0.92[ASN][1000 genomes]
rs12662543	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12662823	0.96[ASN][1000 genomes]
rs12662940	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12663086	0.95[ASN][1000 genomes]
rs12663957	0.96[ASN][1000 genomes]
rs12664900	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16890215	0.84[ASN][1000 genomes]
rs16890247	0.91[ASN][1000 genomes]
rs16890298	0.98[ASN][1000 genomes]
rs16890299	0.98[ASN][1000 genomes]
rs16890301	0.83[ASN][1000 genomes]
rs16890305	0.99[ASN][1000 genomes]
rs16890307	0.98[ASN][1000 genomes]
rs16890309	0.99[ASN][1000 genomes]
rs16890341	0.80[ASN][1000 genomes]
rs1923280	0.80[EUR][1000 genomes]
rs2055207	0.80[ASN][1000 genomes]
rs2145887	0.82[AFR][1000 genomes]
rs2645111	0.80[ASN][1000 genomes]
rs2645125	0.83[ASN][1000 genomes]
rs2842521	0.83[ASN][1000 genomes]
rs28740822	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34370874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35142414	0.93[EUR][1000 genomes]
rs35248010	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3852216	0.91[ASN][1000 genomes]
rs55707043	0.86[EUR][1000 genomes]
rs55743233	0.86[EUR][1000 genomes]
rs55786741	0.83[EUR][1000 genomes]
rs55825770	0.86[EUR][1000 genomes]
rs55836194	0.86[EUR][1000 genomes]
rs55878533	0.86[EUR][1000 genomes]
rs55972258	0.80[EUR][1000 genomes]
rs55990078	0.86[EUR][1000 genomes]
rs56073681	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56106114	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56178553	0.80[EUR][1000 genomes]
rs56229452	0.86[EUR][1000 genomes]
rs56308246	0.86[EUR][1000 genomes]
rs56348433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56366053	0.97[EUR][1000 genomes]
rs56390138	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56413211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56688119	0.80[ASN][1000 genomes]
rs56914148	0.86[EUR][1000 genomes]
rs57040650	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57142729	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57160603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57180729	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57276677	0.90[ASN][1000 genomes]
rs57458792	0.98[ASN][1000 genomes]
rs57564251	0.80[EUR][1000 genomes]
rs57591988	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57911756	0.90[ASN][1000 genomes]
rs57995712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58003999	0.80[EUR][1000 genomes]
rs58084785	0.99[ASN][1000 genomes]
rs58320470	0.84[ASN][1000 genomes]
rs58332635	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58473303	0.96[ASN][1000 genomes]
rs59036086	0.91[ASN][1000 genomes]
rs59103990	0.93[ASN][1000 genomes]
rs59450336	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59578279	0.86[EUR][1000 genomes]
rs59769374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59859268	0.86[ASN][1000 genomes]
rs59996041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60109083	0.80[EUR][1000 genomes]
rs60404082	0.96[ASN][1000 genomes]
rs60425175	0.80[ASN][1000 genomes]
rs60508820	0.96[ASN][1000 genomes]
rs60637081	0.80[ASN][1000 genomes]
rs60883115	0.94[ASN][1000 genomes]
rs61090283	0.84[ASN][1000 genomes]
rs61108907	0.86[ASN][1000 genomes]
rs61172238	0.80[ASN][1000 genomes]
rs61277916	0.96[ASN][1000 genomes]
rs71569402	0.83[ASN][1000 genomes]
rs73417491	0.81[EUR][1000 genomes]
rs73417963	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417971	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73417972	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73417996	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73417997	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73419418	0.81[EUR][1000 genomes]
rs73419422	0.81[EUR][1000 genomes]
rs73419436	0.81[EUR][1000 genomes]
rs73419447	0.81[EUR][1000 genomes]
rs73419451	0.81[EUR][1000 genomes]
rs73419457	0.81[EUR][1000 genomes]
rs73419461	0.81[EUR][1000 genomes]
rs73419465	0.81[EUR][1000 genomes]
rs73419475	0.81[EUR][1000 genomes]
rs73419487	0.81[EUR][1000 genomes]
rs73419907	0.87[EUR][1000 genomes]
rs73419916	0.86[EUR][1000 genomes]
rs73419919	0.86[EUR][1000 genomes]
rs73419927	0.86[EUR][1000 genomes]
rs73419930	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73419938	0.86[EUR][1000 genomes]
rs73419941	0.86[EUR][1000 genomes]
rs73419944	0.86[EUR][1000 genomes]
rs73419945	0.86[EUR][1000 genomes]
rs73419946	0.86[EUR][1000 genomes]
rs73419947	0.82[EUR][1000 genomes]
rs73419949	0.86[EUR][1000 genomes]
rs73419955	0.86[EUR][1000 genomes]
rs73419959	0.86[EUR][1000 genomes]
rs73419960	0.86[EUR][1000 genomes]
rs73419963	0.86[EUR][1000 genomes]
rs73419996	0.83[EUR][1000 genomes]
rs73421427	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421433	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73421436	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73421439	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73421444	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421455	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421464	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73421467	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421473	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421477	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421479	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421483	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421810	0.80[EUR][1000 genomes]
rs73421817	0.80[EUR][1000 genomes]
rs73421819	0.80[EUR][1000 genomes]
rs73421822	0.80[EUR][1000 genomes]
rs73421825	0.80[EUR][1000 genomes]
rs73421831	0.80[EUR][1000 genomes]
rs73421842	0.80[EUR][1000 genomes]
rs73421855	0.80[EUR][1000 genomes]
rs73421866	0.80[EUR][1000 genomes]
rs73421874	0.80[EUR][1000 genomes]
rs73421889	0.80[EUR][1000 genomes]
rs752110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739801	0.88[ASN][1000 genomes]
rs9470765	0.82[EUR][1000 genomes]
rs9470772	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2753764	chr6:37963308-37978172	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34450	chr6:37963308-38007241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37956200-37978800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:37957800-37976400	Weak transcription	Aorta	Aorta
3	chr6:37959400-37975600	Weak transcription	Left Ventricle	heart
4	chr6:37960800-37982400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:37962000-37973200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:37962200-37975800	Weak transcription	Liver	Liver
7	chr6:37963000-37973400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:37963000-37973400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:37963000-37975600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:37963000-37975800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:37963000-37977600	Weak transcription	Ovary	ovary
12	chr6:37963000-37984800	Weak transcription	Right Atrium	heart
13	chr6:37963000-37995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:37965600-37982200	Weak transcription	Psoas Muscle	Psoas
15	chr6:37965800-37979000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:37967600-37977600	Weak transcription	Primary B cells from cord blood	blood
17	chr6:37969200-37987800	Weak transcription	Fetal Kidney	kidney
18	chr6:37969400-37976400	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:37969400-37977600	Weak transcription	Fetal Intestine Small	intestine
20	chr6:37969600-37973600	Weak transcription	Fetal Lung	lung
21	chr6:37970800-37984200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:37971000-37976200	Weak transcription	HepG2	liver
23	chr6:37971200-37975800	Weak transcription	Fetal Heart	heart
24	chr6:37972200-37976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:37972400-37983800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:37972800-37976400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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