Variant report

Variant	rs11759725
Chromosome Location	chr6:37982087-37982088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10498739	0.88[ASN][1000 genomes]
rs10498740	0.88[ASN][1000 genomes]
rs10947710	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11750950	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11751706	0.89[EUR][1000 genomes]
rs11752623	0.97[EUR][1000 genomes]
rs11752863	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11753054	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11753122	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11753267	0.89[EUR][1000 genomes]
rs11753388	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11753408	0.81[AFR][1000 genomes]
rs11754980	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755894	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11756030	0.89[EUR][1000 genomes]
rs11756626	0.83[EUR][1000 genomes]
rs11757072	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11757323	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11758540	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11758747	0.85[AFR][1000 genomes]
rs11759205	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11759483	0.84[AFR][1000 genomes]
rs12660221	0.82[ASN][1000 genomes]
rs12660498	0.93[ASN][1000 genomes]
rs12660732	0.82[ASN][1000 genomes]
rs12660773	0.97[ASN][1000 genomes]
rs12660922	0.88[ASN][1000 genomes]
rs12661073	0.82[ASN][1000 genomes]
rs12661109	0.97[ASN][1000 genomes]
rs12661480	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12662305	0.87[ASN][1000 genomes]
rs12662823	0.97[ASN][1000 genomes]
rs12662940	0.84[AFR][1000 genomes]
rs12663086	0.97[ASN][1000 genomes]
rs12663427	0.80[ASN][1000 genomes]
rs12663957	0.97[ASN][1000 genomes]
rs12664900	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16890247	0.86[ASN][1000 genomes]
rs16890298	0.93[ASN][1000 genomes]
rs16890299	0.93[ASN][1000 genomes]
rs16890305	0.94[ASN][1000 genomes]
rs16890307	0.93[ASN][1000 genomes]
rs16890309	0.94[ASN][1000 genomes]
rs16890341	0.82[ASN][1000 genomes]
rs2055207	0.82[ASN][1000 genomes]
rs2055208	0.80[ASN][1000 genomes]
rs28740822	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34370874	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35142414	0.90[EUR][1000 genomes]
rs35248010	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3852216	0.86[ASN][1000 genomes]
rs55707043	0.83[EUR][1000 genomes]
rs55743233	0.83[EUR][1000 genomes]
rs55786703	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55786741	0.80[EUR][1000 genomes]
rs55825770	0.83[EUR][1000 genomes]
rs55836194	0.83[EUR][1000 genomes]
rs55878533	0.83[EUR][1000 genomes]
rs55990078	0.83[EUR][1000 genomes]
rs56073681	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56106114	0.89[EUR][1000 genomes]
rs56229452	0.83[EUR][1000 genomes]
rs56308246	0.83[EUR][1000 genomes]
rs56348433	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56366053	0.94[EUR][1000 genomes]
rs56390138	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56413211	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56688119	0.82[ASN][1000 genomes]
rs56914148	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57040650	0.89[EUR][1000 genomes]
rs57142729	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57160603	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57180729	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57276677	0.85[ASN][1000 genomes]
rs57458792	0.93[ASN][1000 genomes]
rs57591988	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57911756	0.85[ASN][1000 genomes]
rs57995712	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58084785	0.94[ASN][1000 genomes]
rs58332635	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58473303	0.97[ASN][1000 genomes]
rs59036086	0.86[ASN][1000 genomes]
rs59103990	0.88[ASN][1000 genomes]
rs59450336	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59578279	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59769374	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59859268	0.81[ASN][1000 genomes]
rs59996041	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60404082	0.97[ASN][1000 genomes]
rs60425175	0.82[ASN][1000 genomes]
rs60508820	0.97[ASN][1000 genomes]
rs60883115	0.96[ASN][1000 genomes]
rs61108907	0.81[ASN][1000 genomes]
rs61172238	0.82[ASN][1000 genomes]
rs61277916	0.91[ASN][1000 genomes]
rs73417963	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73417971	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73417972	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73417996	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73417997	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73419907	0.84[EUR][1000 genomes]
rs73419916	0.83[EUR][1000 genomes]
rs73419919	0.83[EUR][1000 genomes]
rs73419927	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73419930	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73419938	0.83[EUR][1000 genomes]
rs73419941	0.83[EUR][1000 genomes]
rs73419944	0.83[EUR][1000 genomes]
rs73419945	0.83[EUR][1000 genomes]
rs73419946	0.83[EUR][1000 genomes]
rs73419949	0.83[EUR][1000 genomes]
rs73419955	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73419959	0.83[EUR][1000 genomes]
rs73419960	0.83[EUR][1000 genomes]
rs73419963	0.83[EUR][1000 genomes]
rs73419996	0.80[EUR][1000 genomes]
rs73421427	0.89[EUR][1000 genomes]
rs73421433	0.89[EUR][1000 genomes]
rs73421436	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73421439	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73421444	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421455	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73421464	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73421467	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421473	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421477	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421479	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73421483	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs752110	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7739801	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv34450	chr6:37963308-38007241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37960800-37982400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:37963000-37984800	Weak transcription	Right Atrium	heart
3	chr6:37963000-37995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37965600-37982200	Weak transcription	Psoas Muscle	Psoas
5	chr6:37969200-37987800	Weak transcription	Fetal Kidney	kidney
6	chr6:37970800-37984200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:37972400-37983800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:37974800-37984600	Weak transcription	Placenta	Placenta
9	chr6:37976600-37983000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:37976600-37988400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:37976800-37983200	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:37976800-37987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:37977400-37982600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:37978200-37987600	Weak transcription	Pancreas	Pancrea
15	chr6:37978600-37983000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:37979200-37984400	Weak transcription	Primary B cells from cord blood	blood
17	chr6:37979400-37989000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:37980000-37986800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:37980600-37987800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:37981400-37982400	Weak transcription	Liver	Liver
21	chr6:37981400-37982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:37981400-37983000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:37981400-37983200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:37981400-37989000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:37981400-37989000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:37981400-37990400	Weak transcription	Fetal Brain Female	brain

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