Variant report

Variant	rs58332635
Chromosome Location	chr6:38029056-38029057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 221 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs10947710	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11544072	0.86[EUR][1000 genomes]
rs11750950	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11751094	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11751937	0.86[EUR][1000 genomes]
rs11752623	0.86[EUR][1000 genomes]
rs11752799	0.87[ASN][1000 genomes]
rs11753054	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11753067	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753122	0.86[EUR][1000 genomes]
rs11753160	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753388	0.88[EUR][1000 genomes]
rs11753391	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753408	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753437	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753563	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753759	0.88[EUR][1000 genomes]
rs11754980	0.86[EUR][1000 genomes]
rs11755190	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11755192	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11755600	0.88[EUR][1000 genomes]
rs11755721	0.83[EUR][1000 genomes]
rs11755894	0.88[EUR][1000 genomes]
rs11756626	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11756902	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11757072	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757143	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11757323	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11757654	0.88[EUR][1000 genomes]
rs11757980	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11758095	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11758540	0.83[EUR][1000 genomes]
rs11758747	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11759205	0.86[EUR][1000 genomes]
rs11759483	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11759725	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11759816	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11759859	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11760121	0.83[EUR][1000 genomes]
rs12660221	0.99[ASN][1000 genomes]
rs12660732	0.99[ASN][1000 genomes]
rs12660773	0.83[ASN][1000 genomes]
rs12661073	0.99[ASN][1000 genomes]
rs12661109	0.83[ASN][1000 genomes]
rs12661129	0.86[ASN][1000 genomes]
rs12661480	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12662072	0.83[ASN][1000 genomes]
rs12662543	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12662823	0.83[ASN][1000 genomes]
rs12662940	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663086	0.82[ASN][1000 genomes]
rs12663207	0.86[ASN][1000 genomes]
rs12663406	0.84[ASN][1000 genomes]
rs12663427	0.98[ASN][1000 genomes]
rs12663450	0.84[ASN][1000 genomes]
rs12663957	0.83[ASN][1000 genomes]
rs12664900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665229	0.86[ASN][1000 genomes]
rs16890305	0.80[ASN][1000 genomes]
rs16890309	0.80[ASN][1000 genomes]
rs16890341	0.99[ASN][1000 genomes]
rs16890362	0.88[ASN][1000 genomes]
rs16890370	0.88[ASN][1000 genomes]
rs1885324	0.81[ASN][1000 genomes]
rs1885326	0.88[ASN][1000 genomes]
rs1923280	0.88[EUR][1000 genomes]
rs2055207	0.99[ASN][1000 genomes]
rs2055208	0.98[ASN][1000 genomes]
rs2073021	0.87[ASN][1000 genomes]
rs2145886	0.86[ASN][1000 genomes]
rs2145887	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2145888	0.88[ASN][1000 genomes]
rs2281264	0.86[ASN][1000 genomes]
rs2281265	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395692	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395693	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28740822	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34370874	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35142414	0.85[EUR][1000 genomes]
rs35248010	0.88[EUR][1000 genomes]
rs3800364	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4524602	0.89[ASN][1000 genomes]
rs55707043	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55731063	0.86[EUR][1000 genomes]
rs55743233	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786703	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55786741	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55825770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836194	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55878533	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55902626	0.86[EUR][1000 genomes]
rs55972258	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55990078	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56021282	0.83[EUR][1000 genomes]
rs56030069	0.86[EUR][1000 genomes]
rs56073681	0.83[EUR][1000 genomes]
rs56178553	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56195121	0.82[EUR][1000 genomes]
rs56229452	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56247028	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56296639	0.81[EUR][1000 genomes]
rs56308246	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56348433	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56366053	0.85[EUR][1000 genomes]
rs56390138	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56413211	0.88[EUR][1000 genomes]
rs56688119	0.99[ASN][1000 genomes]
rs56739079	0.86[ASN][1000 genomes]
rs56914148	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56957219	0.86[ASN][1000 genomes]
rs57142729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57160603	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57180729	0.88[EUR][1000 genomes]
rs57208246	0.86[ASN][1000 genomes]
rs57236731	0.86[ASN][1000 genomes]
rs57405566	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57409051	0.89[ASN][1000 genomes]
rs57525562	0.89[ASN][1000 genomes]
rs57537146	0.89[ASN][1000 genomes]
rs57564251	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57630694	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57812773	0.86[ASN][1000 genomes]
rs57995712	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58003999	0.88[EUR][1000 genomes]
rs58084785	0.80[ASN][1000 genomes]
rs58204078	0.88[ASN][1000 genomes]
rs58397443	0.86[ASN][1000 genomes]
rs58418493	0.81[EUR][1000 genomes]
rs58473303	0.83[ASN][1000 genomes]
rs59074919	0.86[ASN][1000 genomes]
rs59170481	0.86[ASN][1000 genomes]
rs59219746	0.89[ASN][1000 genomes]
rs59350040	0.86[ASN][1000 genomes]
rs59430914	0.81[ASN][1000 genomes]
rs59450336	0.86[EUR][1000 genomes]
rs59578279	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59684841	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59693994	0.86[EUR][1000 genomes]
rs59769374	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59996041	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60075988	0.86[ASN][1000 genomes]
rs60109083	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60404082	0.83[ASN][1000 genomes]
rs60425175	0.99[ASN][1000 genomes]
rs60508820	0.83[ASN][1000 genomes]
rs60883115	0.82[ASN][1000 genomes]
rs60986358	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61146875	0.86[ASN][1000 genomes]
rs61172238	0.99[ASN][1000 genomes]
rs73417963	0.86[EUR][1000 genomes]
rs73417971	0.88[EUR][1000 genomes]
rs73417972	0.88[EUR][1000 genomes]
rs73417996	0.88[EUR][1000 genomes]
rs73417997	0.88[EUR][1000 genomes]
rs73419907	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73419916	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419919	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419927	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73419930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73419938	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419941	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419944	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419945	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419946	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419947	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73419949	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73419955	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73419959	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73419960	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73419963	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73419996	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73421444	0.83[EUR][1000 genomes]
rs73421455	0.83[EUR][1000 genomes]
rs73421464	0.84[EUR][1000 genomes]
rs73421467	0.86[EUR][1000 genomes]
rs73421473	0.86[EUR][1000 genomes]
rs73421477	0.86[EUR][1000 genomes]
rs73421479	0.86[EUR][1000 genomes]
rs73421483	0.86[EUR][1000 genomes]
rs73421810	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421817	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421819	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421822	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421825	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421831	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421842	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421855	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421866	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73421874	0.88[EUR][1000 genomes]
rs73421889	0.88[EUR][1000 genomes]
rs73423525	0.86[EUR][1000 genomes]
rs73734319	0.86[ASN][1000 genomes]
rs73734323	0.86[ASN][1000 genomes]
rs752110	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7745340	0.84[ASN][1000 genomes]
rs7748392	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748913	0.82[ASN][1000 genomes]
rs7760452	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs874095	0.86[ASN][1000 genomes]
rs876818	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462389	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462393	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462394	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462395	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462396	0.86[ASN][1000 genomes]
rs9462397	0.86[ASN][1000 genomes]
rs9462398	0.86[ASN][1000 genomes]
rs9470765	0.90[EUR][1000 genomes]
rs9470772	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470779	0.85[EUR][1000 genomes]
rs9470784	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470794	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470796	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470798	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470802	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37985000-38030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:37998600-38029200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:38002400-38029400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:38004200-38029200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:38011800-38029400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:38012400-38029400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:38015400-38029600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:38015600-38029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:38016200-38029400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:38017200-38055000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:38017400-38031000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:38018400-38030000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:38019000-38031800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:38019400-38029400	Weak transcription	Right Ventricle	heart
15	chr6:38019400-38029400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:38020000-38029400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:38020200-38029200	Weak transcription	A549	lung
18	chr6:38020200-38030000	Weak transcription	Fetal Brain Female	brain
19	chr6:38020400-38046200	Weak transcription	Stomach Mucosa	stomach
20	chr6:38020800-38029400	Weak transcription	Spleen	Spleen
21	chr6:38021000-38029200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:38021400-38029400	Weak transcription	Esophagus	oesophagus
23	chr6:38021400-38029400	Weak transcription	Left Ventricle	heart
24	chr6:38021400-38029400	Weak transcription	Lung	lung
25	chr6:38022600-38030000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:38023000-38054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:38023200-38029200	Weak transcription	K562	blood
28	chr6:38023200-38029400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:38023200-38029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:38023200-38029800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:38023200-38052800	Weak transcription	Gastric	stomach
32	chr6:38023400-38029400	Weak transcription	Pancreas	Pancrea
33	chr6:38023600-38029600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:38024000-38029400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:38024400-38029400	Weak transcription	Liver	Liver
36	chr6:38024400-38029400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:38024400-38029600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:38024400-38033200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:38024400-38040000	Weak transcription	Fetal Heart	heart
40	chr6:38024600-38029400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:38024600-38029400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:38024600-38029400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:38024600-38029400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:38024600-38029400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:38024600-38029400	Weak transcription	Aorta	Aorta
46	chr6:38024600-38030800	Weak transcription	Brain Angular Gyrus	brain
47	chr6:38024600-38033800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:38024600-38035200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:38024600-38041800	Weak transcription	Fetal Brain Male	brain
50	chr6:38024600-38045000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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